View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3064_high_13 (Length: 455)
Name: NF3064_high_13
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_13 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0008 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 172 - 455
Target Start/End: Original strand, 272522 - 272805
Alignment:
| Q |
172 |
actatgtattcaccatctgagctagatccttcactacctttcacctctcctaccaccccaacatcactgtcatacctactatccaatccttcagttactg |
271 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
272522 |
actatgtattcaccatctgagctagagccttcactaccttttacctctcctaccacctcaacatcactgtcatacctactatccaatccttcagttactg |
272621 |
T |
|
| Q |
272 |
gagtctcaacataaaaatcagcagctacctcattctcaaactcattaatgaacctcacacagtctctatctgttttcagcaaccttaaaccaccattcaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
272622 |
gagtctcaacataaaaatcagcagctacctcattctcaaactcattaatgaacctcacacagtctctatctgttttaagcaaccttaaaccaccattcaa |
272721 |
T |
|
| Q |
372 |
acttccaccaggtataacataccacagcttatagtcaccttccacacctatctcccttactagtttgtccagatctatgagatt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
272722 |
acttccaccaggtataacataccacagcttatagtcaccttccacacctatctcccttactagtttgtccagatctatgagatt |
272805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 272332 - 272381
Alignment:
| Q |
18 |
cacagatgtccactcccagtcttcatcatactcactgtcatgctctgata |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
272332 |
cacagatgtccactcccagtcttcatcatactcactgtcatactctgata |
272381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 173 - 455
Target Start/End: Complemental strand, 179770 - 179488
Alignment:
| Q |
173 |
ctatgtattcaccatctgagctagatccttcactacctttcacctctcctaccaccccaacatcactgtcatacctactatccaatccttcagttactgg |
272 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
179770 |
ctatgtattcaccatctgagctagagtcttcactaccttttacctcttctaccacctcaacatcaccgtcatacctactatccaatccttcagttagtgg |
179671 |
T |
|
| Q |
273 |
agtctcaacataaaaatcagcagctacctcattctcaaactcattaatgaacctcacacagtctctatctgttttcagcaaccttaaaccaccattcaaa |
372 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
179670 |
agtctcaacataaatatcagcagctacctgattctgaaactcattaatgaacctcacacagtctctatctgttttcagcaaccttaaaccaccacccaaa |
179571 |
T |
|
| Q |
373 |
cttccaccaggtataacataccacagcttatagtcaccttccacacctatctcccttactagtttgtccagatctatgagatt |
455 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
179570 |
cttccaccaggtataacataccacaacttatagtcaccttccacacctatctcccttactagtttgtccagatcattgagatt |
179488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 179933 - 179885
Alignment:
| Q |
19 |
acagatgtccactcccagtcttcatcatactcactgtcatgctctgata |
67 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
179933 |
acagatgtccactcctagtcttcatcatactcactgtcatactctgata |
179885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University