View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3064_high_15 (Length: 439)
Name: NF3064_high_15
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 2525142 - 2524732
Alignment:
| Q |
18 |
aaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525142 |
aaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgta |
2525043 |
T |
|
| Q |
118 |
tgttgatcatggctataaaatgcatttttgatttgatatttgtactaccttcttttataaacaaagatatgttatagagattatgatggatacttgaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525042 |
tgttgatcatggctataaaatgcatttttgatttgatatttgtactgccttcttttataaacaaagatatgttatagagattatgatggatacttgaacc |
2524943 |
T |
|
| Q |
218 |
caatacaaatatttgaatcaaagatgtctttc-atgcacattacatgcatgtttagaacaccaatcaacaaaactataacataacttccttgccctatga |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524942 |
caataaaaatatttgaatcaaagatgtctttcaatgcacatta----catgtttagaacaccgatcaacaaaactataacataacttccttgccctatga |
2524847 |
T |
|
| Q |
317 |
gattcaaaccaactctccagtataatgatttaacaacccaaacgataagaaacctcacccttgaaattaattttatattttgaaattcaaagaccccatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524846 |
gattcaaaccaactctccagtataatgatttaacaacccaaacgataagaaacctcacccttgaaattaattttatattttgaaattcaaagaccccatc |
2524747 |
T |
|
| Q |
417 |
ttgctttttcatctc |
431 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
2524746 |
ttgctttttcttctc |
2524732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 32924824 - 32924749
Alignment:
| Q |
39 |
taagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacat |
114 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
32924824 |
taagaggagccaccattgatggcaatacaatcatcacctatttataagaaaaccaactcattttaaaattgcacat |
32924749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University