View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_high_18 (Length: 401)

Name: NF3064_high_18
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_high_18
NF3064_high_18
[»] chr1 (22 HSPs)
chr1 (27-383)||(14664191-14664547)
chr1 (92-383)||(14654400-14654691)
chr1 (113-383)||(14669769-14670038)
chr1 (208-383)||(14705960-14706135)
chr1 (162-383)||(14716119-14716338)
chr1 (224-383)||(14676520-14676679)
chr1 (224-383)||(14683638-14683797)
chr1 (164-383)||(14708407-14708625)
chr1 (230-383)||(14652419-14652572)
chr1 (230-383)||(14662210-14662363)
chr1 (162-383)||(14674300-14674528)
chr1 (162-383)||(14679678-14679906)
chr1 (237-383)||(14681501-14681646)
chr1 (261-383)||(14667171-14667292)
chr1 (304-383)||(33988038-33988117)
chr1 (113-206)||(14676443-14676536)
chr1 (113-206)||(14683561-14683654)
chr1 (327-383)||(28366259-28366315)
chr1 (329-383)||(38175590-38175644)
chr1 (339-383)||(11872541-11872585)
chr1 (332-377)||(28698549-28698594)
chr1 (342-383)||(37422175-37422216)
[»] chr2 (23 HSPs)
chr2 (113-383)||(30731786-30732055)
chr2 (240-383)||(32917986-32918127)
chr2 (304-383)||(8973280-8973359)
chr2 (304-383)||(8979290-8979369)
chr2 (304-383)||(9023415-9023494)
chr2 (304-383)||(9026754-9026833)
chr2 (261-383)||(30733914-30734035)
chr2 (304-383)||(8984661-8984740)
chr2 (304-383)||(9032021-9032100)
chr2 (329-383)||(43850042-43850096)
chr2 (304-383)||(9020815-9020894)
chr2 (304-383)||(9030366-9030445)
chr2 (333-383)||(9008018-9008068)
chr2 (335-383)||(2841077-2841125)
chr2 (304-383)||(8988423-8988502)
chr2 (304-383)||(9016461-9016540)
chr2 (338-383)||(19232459-19232504)
chr2 (304-383)||(8992116-8992195)
chr2 (66-106)||(8979048-8979088)
chr2 (339-374)||(39814115-39814150)
chr2 (304-365)||(8975663-8975724)
chr2 (64-113)||(8995547-8995596)
chr2 (343-383)||(10763938-10763978)
[»] chr8 (11 HSPs)
chr8 (304-383)||(41841212-41841291)
chr8 (304-383)||(44878951-44879030)
chr8 (304-383)||(44880891-44880970)
chr8 (260-383)||(10944459-10944581)
chr8 (336-383)||(40054312-40054359)
chr8 (329-379)||(42872514-42872564)
chr8 (338-383)||(37679757-37679802)
chr8 (336-383)||(37682057-37682104)
chr8 (328-379)||(42220909-42220960)
chr8 (328-382)||(42555144-42555198)
chr8 (353-383)||(44582870-44582900)
[»] chr6 (4 HSPs)
chr6 (304-383)||(10795950-10796029)
chr6 (327-383)||(10791712-10791768)
chr6 (336-383)||(30521242-30521289)
chr6 (338-383)||(8875691-8875736)
[»] chr4 (11 HSPs)
chr4 (304-383)||(50077259-50077338)
chr4 (324-383)||(11652452-11652511)
chr4 (328-383)||(49106589-49106644)
chr4 (304-383)||(49108693-49108772)
chr4 (327-383)||(3461202-3461258)
chr4 (337-383)||(26984727-26984773)
chr4 (337-383)||(26998800-26998846)
chr4 (337-383)||(48205832-48205878)
chr4 (343-382)||(26982549-26982588)
chr4 (204-236)||(23267684-23267716)
chr4 (341-377)||(34481155-34481191)
[»] chr5 (4 HSPs)
chr5 (304-383)||(1716512-1716591)
chr5 (329-383)||(7524961-7525015)
chr5 (336-383)||(3643640-3643687)
chr5 (340-383)||(4103249-4103292)
[»] chr3 (1 HSPs)
chr3 (338-383)||(15758563-15758608)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 27 - 383
Target Start/End: Complemental strand, 14664547 - 14664191
Alignment:
Q  27 ttcttttctctttcgaagctgtttgttgttctatcaataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat 126  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664547 ttcttttctctttcgaagctgtttgttgttctatcgataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat 14664448  T
Q  127 tatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14664447 tatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaatatcctctgcttggtaattgct 14664348  T
Q  227 ctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtcca 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14664347 ctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgtcca 14664248  T
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664247 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 92 - 383
Target Start/End: Complemental strand, 14654691 - 14654400
Alignment:
Q  92 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654691 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 14654592  T
Q  192 tctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 291  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654591 tctatgttggcaatatcctctgcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 14654492  T
Q  292 agaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654491 agaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14654400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 113 - 383
Target Start/End: Complemental strand, 14670038 - 14669769
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 212  Q
    ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||| || |||||    
T  14670038 atgaccattaccattaccattgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggctgtatgttggca-taacctct 14669940  T
Q  213 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  14669939 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 14669840  T
Q  313 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669839 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14669769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 208 - 383
Target Start/End: Original strand, 14705960 - 14706135
Alignment:
Q  208 cctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatat 307  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  | ||| ||||    
T  14705960 cctctgcttggtaattgctctttgttggcaacacatgcatacaatgagaaatagtcccacatcgagcagtcaagaaagaaactgagaacgtttctgatat 14706059  T
Q  308 aaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706060 aaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14706135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 162 - 383
Target Start/End: Original strand, 14716119 - 14716338
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatag 261  Q
    |||||||||||||||||| | || |||| |||||||| |    ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14716119 tggatgaattggtgaaatacgttggtgggctctatgttgcg--tatgctctgcttggaaattgctctttgttggcaacacatgcgtacaatgagaaatag 14716216  T
Q  262 tcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggcta 361  Q
    |||||||| ||||||||| ||||  ||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  14716217 tcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggcta 14716316  T
Q  362 agatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||    
T  14716317 agatcaagtgtagtatctgttc 14716338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 14676520 - 14676679
Alignment:
Q  224 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 323  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14676520 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14676619  T
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676620 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 14683638 - 14683797
Alignment:
Q  224 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 323  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14683638 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14683737  T
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683738 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 164 - 383
Target Start/End: Original strand, 14708407 - 14708625
Alignment:
Q  164 gatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtc 263  Q
    ||||||||| ||||||| ||||||||  ||| ||| |||| ||| ||||||||||||| ||||||||||||| ||| |||| || |||||||||||||||    
T  14708407 gatgaattgctgaaatgatttagtgggatctttgttggca-tatactctgcttggtaattgctctttgttggtaacgcatgtgtgcaatgagaaatagtc 14708505  T
Q  264 ccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaag 363  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||  ||  || ||||||||||||||||||||||||||||||||||||||||    
T  14708506 ccacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggctaag 14708605  T
Q  364 atcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||    
T  14708606 atcaagtgtagtatctgttc 14708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 14652419 - 14652572
Alignment:
Q  230 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14652419 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14652518  T
Q  330 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652519 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 14662210 - 14662363
Alignment:
Q  230 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14662210 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14662309  T
Q  330 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662310 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 162 - 383
Target Start/End: Original strand, 14674300 - 14674528
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 252  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14674300 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14674398  T
Q  253 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 352  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14674399 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14674497  T
Q  353 ttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||    
T  14674498 ttttggctaagatcaagtgtagtatctgttc 14674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 162 - 383
Target Start/End: Original strand, 14679678 - 14679906
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 252  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14679678 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14679776  T
Q  253 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 352  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14679777 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14679875  T
Q  353 ttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||    
T  14679876 ttttggctaagatcaagtgtagtatctgttc 14679906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 237 - 383
Target Start/End: Original strand, 14681501 - 14681646
Alignment:
Q  237 aacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaact 336  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||| ||||||||    
T  14681501 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagcccatttttcaact 14681599  T
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  14681600 tatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14681646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 14667292 - 14667171
Alignment:
Q  261 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 360  Q
    ||||||||||||| |||||||||| |||||||||| |||||  |||||||||||||||    || || ||  ||||||||||||||||||||||||||||    
T  14667292 gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagcaggatctc-atgttgtaactcatacctttctcggccttttggct 14667194  T
Q  361 aagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||    
T  14667193 aagatcaagtgtagtatctgttc 14667171  T

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Target: chr1; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 33988038 - 33988117
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 33988117  T

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Target: chr1; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 14676443 - 14676536
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 206  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14676443 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14676536  T

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Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 14683561 - 14683654
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 206  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14683561 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 28366315 - 28366259
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 28366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 38175644 - 38175590
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 38175590  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 11872585 - 11872541
Alignment:
Q  339 tacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttc 11872541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  332 caactcatacctttctcggccttttggctaagatcaagtgtagtat 377  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 37422175 - 37422216
Alignment:
Q  342 ctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttc 37422216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 113 - 383
Target Start/End: Original strand, 30731786 - 30732055
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 212  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| || |||||    
T  30731786 atgaccattaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca-taacctct 30731884  T
Q  213 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  30731885 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 30731984  T
Q  313 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731985 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30732055  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 32917986 - 32918127
Alignment:
Q  240 acatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcat 339  Q
    ||||||||||| |  ||||||||||||||||||| | |||||||||||||  |||||||| |  ||||||||||||||||||||| | | ||||||||||    
T  32917986 acatgcgtacagtaggaaatagtcccacatcgaggaatcaagaaagcaacatagaaaatg-cagatataaaagcagcagctagtcta-cattcaactcat 32918083  T
Q  340 acctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32918084 acctttctcggccttttggctaagatcaagtgtagtatctgttc 32918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 8973280 - 8973359
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 8979290 - 8979369
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979290 atataaaagcataagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9023415 - 9023494
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9026754 - 9026833
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026754 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9026833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 30733914 - 30734035
Alignment:
Q  261 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 360  Q
    ||||||||||||| |||||||||| ||| |||||| |||||  |||||||||||||||    || || ||  |||| |||||||||||||||||||||||    
T  30733914 gtcccacatcgaggagtcaagaaaacaagtgagaacatgtcagatataaaagcagcaggatctc-atgttgtaacttatacctttctcggccttttggct 30734012  T
Q  361 aagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||    
T  30734013 aagatcaagtgtagtatctgttc 30734035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 8984661 - 8984740
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8984661 atataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttc 8984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9032021 - 9032100
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9032021 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttc 9032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 43850042 - 43850096
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 43850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9020815 - 9020894
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||| ||  ||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9020815 atataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 9020894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9030366 - 9030445
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  9030366 atataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttc 9030445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 9008018 - 9008068
Alignment:
Q  333 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9008068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 2841125 - 2841077
Alignment:
Q  335 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 2841077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 8988423 - 8988502
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  8988423 atataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttc 8988502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 9016461 - 9016540
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  9016461 atataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttc 9016540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 19232504 - 19232459
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttc 19232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 8992116 - 8992195
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||  ||| ||| | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| |||||    
T  8992116 atataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttc 8992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 8979048 - 8979088
Alignment:
Q  66 atctttaattcctcaactttagttttacttatgcattaatg 106  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  8979048 atctttaattcttcaactttagttttacctatgcattaatg 8979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  339 tacctttctcggccttttggctaagatcaagtgtag 374  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 8975663 - 8975724
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagat 365  Q
    |||||||||||  ||| |||||| |||||||||||||  |||||  ||||||||||||||||    
T  8975663 atataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 8995547 - 8995596
Alignment:
Q  64 taatctttaattcctcaactttagttttacttatgcattaatgaccacta 113  Q
    ||||||| ||||| |||||||||||||||  |||||||||||| ||||||    
T  8995547 taatcttcaattcttcaactttagttttatctatgcattaatggccacta 8995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 10763978 - 10763938
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||| |||||| ||||||||||||||||||| |||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttc 10763938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 41841291 - 41841212
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841291 atataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 41841212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 44878951 - 44879030
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||  || || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878951 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 44880970 - 44880891
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||  || || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880970 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44880891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 383
Target Start/End: Complemental strand, 10944581 - 10944459
Alignment:
Q  260 agtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggc 359  Q
    |||||||||||||| | |||||||| |||| ||||| |||||  |||||||||||  ||  ||  ||| ||  ||||||||||||||||| |||||||||    
T  10944581 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcgaccttttggc 10944483  T
Q  360 taagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||    
T  10944482 taagatcaagtgtagtatctgttc 10944459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 40054312 - 40054359
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 40054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 37679757 - 37679802
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 37679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 37682057 - 37682104
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 37682104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 42220960 - 42220909
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 379  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220960 ctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 42555198 - 42555144
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 382  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || |||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtt 42555144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 383
Target Start/End: Original strand, 44582870 - 44582900
Alignment:
Q  353 ttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttc 44582900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 10796029 - 10795950
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796029 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10795950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 10791768 - 10791712
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10791712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 30521242 - 30521289
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttc 30521289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 8875691 - 8875736
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttc 8875736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 50077338 - 50077259
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077338 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 50077259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 11652511 - 11652452
Alignment:
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652511 ccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 11652452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 49106644 - 49106589
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49106589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 49108772 - 49108693
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||| ||| ||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108772 atataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49108693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 3461258 - 3461202
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3461202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 26984773 - 26984727
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 26998846 - 26998800
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26998800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 48205832 - 48205878
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttc 48205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgtt 382  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 23267716 - 23267684
Alignment:
Q  204 atatcctctgcttggtaactgctctttgttggc 236  Q
    |||||||||||||||||| ||||||||||||||    
T  23267716 atatcctctgcttggtaattgctctttgttggc 23267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  341 cctttctcggccttttggctaagatcaagtgtagtat 377  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 1716591 - 1716512
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||  || ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716591 atataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 1716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 7524961 - 7525015
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 7525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 3643640 - 3643687
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3643687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 4103249 - 4103292
Alignment:
Q  340 acctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttc 4103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 15758608 - 15758563
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 383  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttc 15758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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