View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_19 (Length: 386)
Name: NF3064_high_19
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 171 - 369
Target Start/End: Original strand, 30715135 - 30715335
Alignment:
| Q |
171 |
gagcctcgaaatttggtaggtccaactct--agaattgtttgcatccttaaaaaacggctctggtttcacaaatgcatagttgctctcatctttgttatc |
268 |
Q |
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| T |
30715135 |
gagcctcgaaattttgtaggtccaactctgtagaattgtttgcatccttaaaaaccggctctggtttcacaaatgcatagttgctctcatgtttgttatg |
30715234 |
T |
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| Q |
269 |
ttttcaaattgttgtattaagggtgaaaaattcctctaacaaaagggtgaaactttggaaatataacaaacaaaaaagggtttggtatgattattacctt |
368 |
Q |
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| T |
30715235 |
ttttcaaattgttgtattaagggtgaaaaattcatctaacaaaagggtgaaactttggaaatattacaaacaaaaaagggtttggtatgattattacctt |
30715334 |
T |
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| Q |
369 |
g |
369 |
Q |
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| T |
30715335 |
g |
30715335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 30714978 - 30715090
Alignment:
| Q |
14 |
aaaattagttaaaggagaaaaacataaataaatctctcgtgttaataccatgggaactccaacgctgatttctactactaagccatatcaacaaatttga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30714978 |
aaaattagttaaaggagaaaaacataaataaatctctcgtgttaataccatgggaactccaacgctgatttctactactcagccatatcaacaaatttga |
30715077 |
T |
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| Q |
114 |
attatctaccacg |
126 |
Q |
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| T |
30715078 |
attttgtaccacg |
30715090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 337
Target Start/End: Original strand, 30733487 - 30733654
Alignment:
| Q |
173 |
gcctcgaaatttggtaggtccaactcta--gaattgtttgcatcct-taaaaaacggctctggtttcacaaatgcatagttgctctcatctttgttatct |
269 |
Q |
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| T |
30733487 |
gcctcaaaattttgtagatccaactctatagagttgtttgcaccctctaaaaatcgactatggtttctcaagtgcatagttgctctcatgtttattacct |
30733586 |
T |
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| Q |
270 |
tttcaaattgttgtattaagggtgaaaaattcctctaacaaaagggtgaaactttggaaatataacaa |
337 |
Q |
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| T |
30733587 |
ttttaaattgttgtattaagggtgaaaaattcttctaaaaaaagtgtcaaaatttggaaatataacaa |
30733654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 30733326 - 30733440
Alignment:
| Q |
8 |
tcgaagaaaattagttaaaggagaaaaacataaataaatctctcgtgttaataccatgggaactccaacgctgatttctactactaagccatatcaacaa |
107 |
Q |
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| T |
30733326 |
tcgaaaaaaattatttaaaagagaaaaacataaat----ctcgcatgttaataccatgggaactccaacgctgatttctaccactcggccatatcaacaa |
30733421 |
T |
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| Q |
108 |
atttgaattatctaccacg |
126 |
Q |
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| T |
30733422 |
atttgaattttctaccacg |
30733440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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