View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_21 (Length: 359)
Name: NF3064_high_21
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 28675022 - 28674723
Alignment:
| Q |
13 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28675022 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgagatgat |
28674923 |
T |
|
| Q |
113 |
caaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagtactacactcgtaattttactgaaaaagttatttatctttccaattttact |
212 |
Q |
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|||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||| ||| || | || |||||||| ||||||| |||||||||||| |
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| T |
28674922 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctctccaattttact |
28674823 |
T |
|
| Q |
213 |
ctttaccaagactcatctgctgattggagggacacacttggaatttcctgggcacctcatcctcctaaagttgaagaactaccaacagtttgcaggtttg |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | ||| ||||| ||||||||| || |||| |||||||||||||| |||||||||||||| |
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| T |
28674822 |
ctttaccaagaccaatctgctgattggagggacacacttgcatttttctgggaacctcatcccccaaaagctgaagaactaccaaaagtttgcaggtttg |
28674723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 28670878 - 28670584
Alignment:
| Q |
13 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
112 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28670878 |
gagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacagattttggatgagatgat |
28670779 |
T |
|
| Q |
113 |
caaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagtactacactcgtaattttactgaaaaagttatttatctttccaattttact |
212 |
Q |
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||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| || |||| |||||||| |||||||||||||||||||| |
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| T |
28670778 |
caatggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatcttaccaaaaaagttgtttatctttccaattttact |
28670679 |
T |
|
| Q |
213 |
ctttaccaagactcatctgctgattggagggacacacttggaatttcctgggcacctcatcctcctaaagttgaagaactaccaacagtttgcag |
307 |
Q |
| |
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|| |||| |||| |||||||||||||||||||||||||| | ||| ||||||||| |||||||||||| || ||||||||| | |||||||| |
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| T |
28670678 |
ctctacctagaccaatctgctgattggagggacacacttgcatttttctgggcacccgatcctcctaaagccgatgaactaccaccggtttgcag |
28670584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 28642295 - 28641996
Alignment:
| Q |
13 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
112 |
Q |
| |
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||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
28642295 |
gagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat |
28642196 |
T |
|
| Q |
113 |
caaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagtactacactcgtaattttactgaaaaagttatttatctttccaattttact |
212 |
Q |
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|||||||| |||||||||||| ||||||||| | ||||| ||||||||||| ||||| ||| || | ||| |||||||| |||||||||||||||||||| |
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| T |
28642195 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttact |
28642096 |
T |
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| Q |
213 |
ctttaccaagactcatctgctgattggagggacacacttggaatttcctgggcacctcatcctcctaaagttgaagaactaccaacagtttgcaggtttg |
312 |
Q |
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|||| | |||| ||||||||| |||||||||||||||| | ||| |||||||||||| ||||| || ||||| ||||||||| ||||||||||||||| |
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| T |
28642095 |
ctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcaccctcccaatgttgatgaactaccaccagtttgcaggtttg |
28641996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 28651156 - 28650857
Alignment:
| Q |
13 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
112 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
28651156 |
gagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttgcatgagatgat |
28651057 |
T |
|
| Q |
113 |
caaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagtactacactcgtaattttactgaaaaagttatttatctttccaattttact |
212 |
Q |
| |
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|||||||| |||||||||||| ||||||||| | ||||| ||||||||||| ||||| ||| || | ||| |||||||| |||||||||||||||||||| |
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| T |
28651056 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttact |
28650957 |
T |
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| Q |
213 |
ctttaccaagactcatctgctgattggagggacacacttggaatttcctgggcacctcatcctcctaaagttgaagaactaccaacagtttgcaggtttg |
312 |
Q |
| |
|
|||| | |||| ||||||||| |||||||||||||||| | ||| |||||||||||||||||| || ||||| ||||||||| ||||||||||||||| |
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| T |
28650956 |
ctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcatcctcccaatgttgatgaactaccaccagtttgcaggtttg |
28650857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 28696382 - 28696233
Alignment:
| Q |
14 |
agatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatc |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696382 |
agatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatc |
28696283 |
T |
|
| Q |
114 |
aaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagta |
163 |
Q |
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||||||| |||||||||||| ||||| ||||||||||| || |||||||| |
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| T |
28696282 |
aaaggaacttgtagatttcatcaacaagatgccaaggtgagaaaagagta |
28696233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 28691498 - 28691342
Alignment:
| Q |
13 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
112 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || | || |||||||||||||||| |
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| T |
28691498 |
gagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgat |
28691399 |
T |
|
| Q |
113 |
caaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagtactacac |
169 |
Q |
| |
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|||||||| |||||||||||| ||||| |||| | ||| ||||||||||| ||||| |
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|
| T |
28691398 |
caaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagagtattacac |
28691342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 28717651 - 28717546
Alignment:
| Q |
63 |
tttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaatttgtagatttcaccaacaggatgccaaggttaggaaagagt |
162 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||| ||||| |||| | ||| |||||||||| |
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| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagt |
28717552 |
T |
|
| Q |
163 |
actaca |
168 |
Q |
| |
|
| |||| |
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|
| T |
28717551 |
attaca |
28717546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 41238469 - 41238553
Alignment:
| Q |
49 |
agaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaatttgtagatttca |
133 |
Q |
| |
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|||| |||||||| || ||||| || |||||||| |||||| || ||||||||||||||||||| ||||||||||||||||| |
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| T |
41238469 |
agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttca |
41238553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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