View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_33 (Length: 302)
Name: NF3064_high_33
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 34661471 - 34661202
Alignment:
| Q |
17 |
actattatgggagtgtaactaattgggagtgcattgatatatatatgcagctaatgaggtatgtgatagatttgcggtgactggttttaatggtaacttg |
116 |
Q |
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| T |
34661471 |
actattatgggagtgtaactaattgggagtgcattgatatat----gcagctaatgaggtatgtgatagatttgcggtgactggttttaatggtaacttg |
34661376 |
T |
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| Q |
117 |
ataagttacctaactcaagagttgaatatgccattggtatcagctgcaaacacactcacaatctttggtggaacagctagcttcacacctctcattggtg |
216 |
Q |
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| T |
34661375 |
ataagttacctaactcaagagttgaatatgccattggtatcagctgcaaacacactcacaatctttggtggaacagctagcttcacacctctcattggtg |
34661276 |
T |
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| Q |
217 |
ctctcatttcagagtcctttgctggtcacttctggaccattaccattgcttccatcatttatgaactggttcat |
290 |
Q |
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| T |
34661275 |
ctctcatttcagagtcctttgctggtcacttctggaccattaccattgcttccatcatttatgaactggttcat |
34661202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 34647266 - 34647113
Alignment:
| Q |
61 |
atgcagctaatgaggtatgtgatagatttgcggtgactggttttaatggtaacttgataagttacctaactcaagagttgaatatgccattggtatcagc |
160 |
Q |
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||||||| ||||| ||||||||||||||||||| |||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||| | || |
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| T |
34647266 |
atgcagcaaatgaagtatgtgatagatttgcgggcgctggatttcacagtaacttgataagttacctaacccaagagttgaatatgccattggtagctgc |
34647167 |
T |
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| Q |
161 |
tgcaaacacactcacaatctttggtggaacagctagcttcacacctctcattgg |
214 |
Q |
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| T |
34647166 |
ttcaaatacactcacaaactttggtggaacatctagcttcacccctcttattgg |
34647113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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