View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_38 (Length: 274)
Name: NF3064_high_38
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 29671368 - 29671621
Alignment:
| Q |
16 |
cactaataaggagaagcacaacaccgagagaccaaaagaaagaaatggtgttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaac |
115 |
Q |
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| T |
29671368 |
cactaataaggagaagcacaacaccgagagaccaaaagaaagaaatggtgttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaac |
29671467 |
T |
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| Q |
116 |
tgcagtgccggcttcacataaaccataagtagtgcaattgagtcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggattga |
215 |
Q |
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| T |
29671468 |
tgcagtgccggcttcacataaaccataagtagtgcaattgagtcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggattga |
29671567 |
T |
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| Q |
216 |
aaagtcattgtggcaattacagttgccaccagcatcaatgttccctttgcttct |
269 |
Q |
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| T |
29671568 |
aaagtcattgtggcaattacagttgccaccagcatcaatgttccccttgtttct |
29671621 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 39949295 - 39949224
Alignment:
| Q |
170 |
tgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgc |
241 |
Q |
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| T |
39949295 |
tgtatcttcttgccaaacaccgcctggtggacttattactgattgaaatgtcattgttgcgattacagttgc |
39949224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 39944950 - 39944879
Alignment:
| Q |
170 |
tgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgc |
241 |
Q |
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| T |
39944950 |
tgtatcttcttgccaaacaccgcccggtggactaattactgactgaaaagtcatagttgcaatcacagttgc |
39944879 |
T |
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