View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_39 (Length: 272)
Name: NF3064_high_39
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 50613704 - 50613460
Alignment:
| Q |
17 |
aggtaggagctacacaacaaagacaaactatcatagcaatatttcaccaagcaactatgatggcagcnnnnnnncagtatggcagaagatttggaaaaag |
116 |
Q |
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| T |
50613704 |
aggtaggagctacacaacaaagacaaattatcatagcaatatttcaccaagcaactatgatggtagcaaaaaaacagtatggcagaagatttggaaaaag |
50613605 |
T |
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| Q |
117 |
ctaaaaagagataagaagaaagttttcaattctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttg |
216 |
Q |
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| T |
50613604 |
ctaaaaagagataagaagaaagttttcaattctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttg |
50613505 |
T |
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| Q |
217 |
atcatggaacaggttggatggaaccagataatctccctcgttcat |
261 |
Q |
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| T |
50613504 |
atcatggaacaggttggatggaaccagataatctccctcgttcat |
50613460 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 1025822 - 1025895
Alignment:
| Q |
186 |
tatgatcaagatacatactcaatgaattttgatcatggaacaggttggatggaaccagataatctccctcgttc |
259 |
Q |
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| T |
1025822 |
tatgatgaagaatcatactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttc |
1025895 |
T |
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