View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_high_4 (Length: 598)

Name: NF3064_high_4
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_high_4
NF3064_high_4
[»] chr4 (1 HSPs)
chr4 (161-504)||(44523853-44524199)
[»] chr2 (4 HSPs)
chr2 (320-504)||(41318931-41319115)
chr2 (164-323)||(41322105-41322264)
chr2 (162-252)||(37726150-37726240)
chr2 (437-504)||(6128526-6128593)
[»] chr7 (6 HSPs)
chr7 (14-159)||(3800200-3800345)
chr7 (19-143)||(3789764-3789888)
chr7 (507-582)||(3800123-3800198)
chr7 (436-505)||(11831185-11831254)
chr7 (442-506)||(37130520-37130584)
chr7 (455-505)||(11831132-11831182)
[»] chr5 (1 HSPs)
chr5 (163-504)||(12503202-12503537)
[»] chr8 (1 HSPs)
chr8 (419-505)||(7495621-7495707)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 161 - 504
Target Start/End: Original strand, 44523853 - 44524199
Alignment:
Q  161 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  44523853 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttac 44523952  T
Q  261 acttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaac 360  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44523953 acttacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaac 44524052  T
Q  361 ggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttgtttgatttct 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  44524053 agtaataaacatcatataaggaaatatacttatggtttgactccatgtattaaggcattacattcacacatattcctttccaatggtttgtttgatttct 44524152  T
Q  461 cttgatttgat---tcattaagagaggaatcttcattattctttaca 504  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  44524153 cttgatttgattcatcattaagagaggaatcttcattattctttaca 44524199  T

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Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 320 - 504
Target Start/End: Complemental strand, 41319115 - 41318931
Alignment:
Q  320 taagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt 419  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  41319115 taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt 41319016  T
Q  420 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41319015 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 41318931  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 41322264 - 41322105
Alignment:
Q  164 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||    
T  41322264 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact 41322165  T
Q  264 tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaag 323  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41322164 tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag 41322105  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 37726240 - 37726150
Alignment:
Q  162 tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagta 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || ||||||||    
T  37726240 tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta 37726150  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 504
Target Start/End: Original strand, 6128526 - 6128593
Alignment:
Q  437 tttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 504  Q
    ||||||||||||||||||| || |||||||||||| |||||   || |||||||| | ||||||||||    
T  6128526 tttccaatggtttgtttgacttgtcttgatttgatccattacttgatgaatcttcttgattctttaca 6128593  T

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Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 3800345 - 3800200
Alignment:
Q  14 atattatcaaataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttg 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800345 atattatcaaataagatcttatctacgccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttg 3800246  T
Q  114 gatttcctgcaatgccaaaacgagatcatggaatatttgatgttga 159  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  3800245 gatttcctgcaatgccaaaacgagatcatgaaatatttgatgttga 3800200  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 3789764 - 3789888
Alignment:
Q  19 atcaaataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggattt 118  Q
    |||||| |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  3789764 atcaaagaagatcttatctacgccgcgccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggattt 3789863  T
Q  119 cctgcaatgccaaaacgagatcatg 143  Q
    ||| |||||| |||| |||||||||    
T  3789864 cctacaatgcgaaaaggagatcatg 3789888  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 507 - 582
Target Start/End: Complemental strand, 3800198 - 3800123
Alignment:
Q  507 ctcaaccagagctcgaaattatgttacctcaacaactattaacaaaagattaaacacacataaatcataaacaatg 582  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||    
T  3800198 ctcaaccaaagctcgaaattatgttacctcaacaactagtaacaaaagattaaagagacagaaatcataaacaatg 3800123  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 11831185 - 11831254
Alignment:
Q  436 ctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 505  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831185 ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831254  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 37130584 - 37130520
Alignment:
Q  442 aatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaat 506  Q
    |||||||| |||||||| ||||||||||||||||||| ||  || | ||||||||||||||||||    
T  37130584 aatggtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttacaat 37130520  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 505
Target Start/End: Complemental strand, 11831182 - 11831132
Alignment:
Q  455 atttctcttgatttgattcattaagagaggaatcttcattattctttacaa 505  Q
    |||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831182 atttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831132  T

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Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 163 - 504
Target Start/End: Original strand, 12503202 - 12503537
Alignment:
Q  163 ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacac 262  Q
    ||||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||| ||||||||||||      
T  12503202 ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac-- 12503299  T
Q  263 ttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacgg 362  Q
        |||||||||   |||| |||||||||||  ||||| ||||| || |||||||||||||| ||| || |||||||||| ||||||||||||||||||    
T  12503300 ----atatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacgg 12503395  T
Q  363 taataaacatcatataaggaaatatactta------------tggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttg 450  Q
    ||||||||   |||||||||||||||||||            |||||||||||||||||| || |||||||||||||||  |||  ||||||||||        
T  12503396 taataaaccatatataaggaaatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcattcacac--attgatttccaatgg---- 12503489  T
Q  451 tttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 504  Q
         ||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  12503490 -----tttatcttgatttgattcattaa-agaggaatcttcgttattctttaca 12503537  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 7495621 - 7495707
Alignment:
Q  419 tgcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 505  Q
    |||||||| ||| |||  |||| ||||||||||||||||| | || |||||||  ||| |  ||||||||||||| |||||||||||    
T  7495621 tgcattcagacaaattattttctaatggtttgtttgatttgttttcatttgatctattgattgaggaatcttcatgattctttacaa 7495707  T

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