View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_40 (Length: 268)
Name: NF3064_high_40
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 6556334 - 6556587
Alignment:
| Q |
16 |
aatatataaaaatttgaaattcgttattgttttatcacaagtattagcaccagggtcacnnnnnnngtcgacaaaggagggctaagcccctcatcagggt |
115 |
Q |
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| T |
6556334 |
aatatataaaaatttgaaattcgttattgttttatcacaagtattagcaccagggtcactttttttgtcgacaaaggagggctaagcccctcatcagggt |
6556433 |
T |
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| Q |
116 |
cacttatcatcaaagtaattggttccaatttttcatcatggaatgttgaaaataacacatgacatataggcttagttgcacttttaatgtctatattgca |
215 |
Q |
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| T |
6556434 |
cacttatcatcaaagtaattggttccaatttttcatcatggaatgttgaaaataacacatgacatataggcttagttgcacttttaatgtctatattgca |
6556533 |
T |
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| Q |
216 |
gctaatatgtgattttgattctgcaatac-tttttgggaaaatttgaaccctca |
268 |
Q |
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| T |
6556534 |
gctaatatgtgattttgattctgcaatacttttttgggaaaatttgatccctca |
6556587 |
T |
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