View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_45 (Length: 253)
Name: NF3064_high_45
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15380100 - 15379865
Alignment:
| Q |
1 |
cacagatcaccctgagactaagaaattagcaaaggataagaaataagattaggttattcttacgatcattcatcaaaaacttaaactaaatggcaatagt |
100 |
Q |
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| T |
15380100 |
cacagatcaccctgagactaagaaaatagcaaaggataagaaataagattaggttattgttacgatcattcatcaaaaacttaaactaaatggcaatagt |
15380001 |
T |
|
| Q |
101 |
tcagcatatcccatggatcatcccgattccatccatcgctgaatcttcttttcaatgagaaatcttactctatttaaagctatcagttgctccactactg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15380000 |
tcagcatatcacatggatcatcccgattccatccatcgctgaatcttcttttcaatgagaaatcttactctatttaaagctatcagttgctccactactg |
15379901 |
T |
|
| Q |
201 |
gtggaagcatagctggtggtcttttgtcatgcaact |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15379900 |
gtggaagcatagctggtggtcttttgtcatgcaact |
15379865 |
T |
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