View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_46 (Length: 253)
Name: NF3064_high_46
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 32775134 - 32775374
Alignment:
| Q |
13 |
aatattcaaagtagttatcttctcagttcatggttattttgggcaagcagatgttcttggcttgccagacactggtggccaggtaaaatttctaccataa |
112 |
Q |
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| T |
32775134 |
aatattcaaagtagttatcttctcagttcatggttattttgggcaagcagatgttcttggcttgccagacactggtggccaggtaaaatttctaccataa |
32775233 |
T |
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| Q |
113 |
ggaacattaattttaattataagtatcaagtagtaaggttttaaattacggtcaatatgccaagattcctattgcatcgtgatccttaacattggagaga |
212 |
Q |
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| T |
32775234 |
ggaacattaattttaattataagtatcaagtagtaaggttttaaattgcggtcaatatgccaagattcctattgcatcgtgatccttaacattggagaga |
32775333 |
T |
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| Q |
213 |
atgcggtgtaatgcggccttagttgcagtcgcagagacatc |
253 |
Q |
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| T |
32775334 |
atgcggtgtaatgcggccttagttgcagtcgcagagacatc |
32775374 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 29120337 - 29120244
Alignment:
| Q |
13 |
aatattcaaagtagttatcttctcagttcatggttattttgggcaagcagatgttcttggcttgccagacactggtggccaggtaaaatttcta |
106 |
Q |
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| T |
29120337 |
aatattcaatgttgtgatcttctctattcatggttattttggtcaagcagatgttcttggcttgccagataccggcggacaggtaacatttcta |
29120244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 39398510 - 39398567
Alignment:
| Q |
40 |
tcatggttattttgggcaagcagatgttcttggcttgccagacactggtggccaggta |
97 |
Q |
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| T |
39398510 |
tcatggttattttgggcaagccaatgtcctgggtttgcctgacactggtgggcaggta |
39398567 |
T |
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