View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3064_high_52 (Length: 239)
Name: NF3064_high_52
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34661225 - 34660994
Alignment:
| Q |
1 |
tccatcatttatgaactggttcatttctctctatatactctttcactcatactacttaattagcatatttcatatatcatgctaaatatattttgcccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34661225 |
tccatcatttatgaactggttcatttctctctatatactctttcactcatactacttaattagcatatttcatatatcatgctaaatatattttgcccta |
34661126 |
T |
|
| Q |
101 |
attttgctcaatatagggaatgataagcataacattatcaactatactcccacacatgcgtcctccaccatgtccaactcaagtgaattgtcaaaaagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34661125 |
cttttgctcaatatagggaatgataagcataacattatcaactatactcccacacatgcgtcctccaccatgtccaactcaagtgaattgtcaaaaagca |
34661026 |
T |
|
| Q |
201 |
aactcctcacaattatcaatatttttcatctc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34661025 |
aactcctcacaattatcaatatttttcatctc |
34660994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 34646637 - 34646583
Alignment:
| Q |
136 |
tatcaactatactcccacacatgcgtcctccaccatgtccaactcaagtgaattg |
190 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||| ||||| ||||| |
|
|
| T |
34646637 |
tatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattg |
34646583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 34666373 - 34666320
Alignment:
| Q |
159 |
cgtcctccaccatgtccaactcaagtgaattgtcaaaaagcaaactcctcacaa |
212 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||| |||| || ||||||||| |
|
|
| T |
34666373 |
cgtcctccaccctgcccaacacaagtgaattgtcaagaagccaaatcctcacaa |
34666320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University