View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_high_61 (Length: 219)

Name: NF3064_high_61
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_high_61
NF3064_high_61
[»] chr1 (1 HSPs)
chr1 (1-219)||(39404022-39404240)
[»] chr8 (17 HSPs)
chr8 (1-212)||(15651384-15651598)
chr8 (1-212)||(15627617-15627831)
chr8 (1-119)||(12064547-12064665)
chr8 (148-215)||(15996925-15996987)
chr8 (164-215)||(12064715-12064766)
chr8 (176-215)||(15607857-15607897)
chr8 (46-82)||(15607948-15607984)
chr8 (46-82)||(15616301-15616337)
chr8 (1-37)||(15616334-15616370)
chr8 (176-215)||(15639375-15639415)
chr8 (46-82)||(15639466-15639502)
chr8 (129-208)||(39465126-39465207)
chr8 (152-215)||(12068491-12068554)
chr8 (177-215)||(39457747-39457785)
chr8 (155-215)||(15616205-15616266)
chr8 (1-37)||(15607981-15608017)
chr8 (1-37)||(15639499-15639535)
[»] chr5 (1 HSPs)
chr5 (176-209)||(20147198-20147231)
[»] scaffold0095 (1 HSPs)
scaffold0095 (129-208)||(23294-23375)
[»] chr2 (1 HSPs)
chr2 (1-118)||(12082527-12082644)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39404022 - 39404240
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctgtcacagttcatagaggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39404022 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtggggctatagctcaaatccctgtcacagttcatagaggc 39404121  T
Q  101 attctgcctcccttccaacgcgggtgattgtcttcctctttctggatatgctgaggtaggtgcaatcctgtattttttcacctgaaatataaaactcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39404122 attctgcctcccttccaacgcgggtgattgtcttcctctttctggatatgctgaggtaggtgcaatcctgtattttttcacctgaaatataaaactcaac 39404221  T
Q  201 ccatgagtatgatctgtaa 219  Q
    |||||||||||||||||||    
T  39404222 ccatgagtatgatctgtaa 39404240  T

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Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15651598 - 15651384
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctgtcacagttcatagaggc 100  Q
    |||||||||||||||||| |||||||||||| || ||||  |||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||    
T  15651598 ctgcctcttgtgcagacaaggacattatcatcgcgaattctaagtctaacttagactgtgtagggctatagctcaaatccctatcaaacttcatagaggc 15651499  T
Q  101 ----attctgcctcccttccaacgcgggtgattgtcttcctctttctggatatgctgaggtaggtgcaatcctgtattttttcacctgaaatataaaact 196  Q
        |||||||||||||||||||  ||||||| |||||||||  |||| || ||||| |||||| | |||| |||| | |||||||||||||||||||||    
T  15651498 attaattctgcctcccttccaacatgggtgatggtcttcctc--tctgaatgtgctggggtaggcgtaatcatgtactgtttcacctgaaatataaaact 15651401  T
Q  197 caa-cccatgagtatga 212  Q
    ||| |||||||||||||    
T  15651400 caaccccatgagtatga 15651384  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15627831 - 15627617
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctgtcacagttcatagaggc 100  Q
    |||||||||||||||||| ||||||||||||  | ||||  |||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||    
T  15627831 ctgcctcttgtgcagacaaggacattatcatcacgaattctaagtctaacttagactgtgtagggctatagctcaaatccctatcaaacttcatagaggc 15627732  T
Q  101 ----attctgcctcccttccaacgcgggtgattgtcttcctctttctggatatgctgaggtaggtgcaatcctgtattttttcacctgaaatataaaact 196  Q
        |||||||||||||||||||  ||||||| |||||||||  |||| || ||||| |||||| | |||| |||| | |||||||||||||||||||||    
T  15627731 attaattctgcctcccttccaacatgggtgatggtcttcctc--tctgaatgtgctggggtaggcgtaatcatgtactgtttcacctgaaatataaaact 15627634  T
Q  197 caa-cccatgagtatga 212  Q
    ||| |||||||||||||    
T  15627633 caaccccatgagtatga 15627617  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 12064547 - 12064665
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctgtcacagttcatagaggc 100  Q
    |||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  12064547 ctgcctcttgtgaagacagggacattatcattgctaattctaagtctaactcagactgtgtagggttatagctcaaatccctgtcaaacttcatagaggc 12064646  T
Q  101 attctgcctcccttccaac 119  Q
    |||||||||||||||||||    
T  12064647 attctgcctcccttccaac 12064665  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 15996925 - 15996987
Alignment:
Q  148 atgctgaggtaggtgcaatcctgtattttttcacctgaaatataaaactcaacccatgagtatgatct 215  Q
    ||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||    
T  15996925 atgctgaggtaggtgcaatcctgt-----ttcacctgaaatatataactcaacccatgagtatgatct 15996987  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 12064715 - 12064766
Alignment:
Q  164 aatcctgtattttttcacctgaaatataaaactcaacccatgagtatgatct 215  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  12064715 aatcctgtactgtttcacctaaaatataaaactcaacccatgagtatgatct 12064766  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 15607897 - 15607857
Alignment:
Q  176 tttcacctgaaatataaaactcaa-cccatgagtatgatct 215  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15607897 tttcacctgaaatataaaactcaaccccatgagtatgatct 15607857  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 15607984 - 15607948
Alignment:
Q  46 ctaactcagactgtgtagggctatagctcaaatccct 82  Q
    |||||| ||||||||||||||||||||||||||||||    
T  15607984 ctaacttagactgtgtagggctatagctcaaatccct 15607948  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 15616337 - 15616301
Alignment:
Q  46 ctaactcagactgtgtagggctatagctcaaatccct 82  Q
    |||||| ||||||||||||||||||||||||||||||    
T  15616337 ctaacttagactgtgtagggctatagctcaaatccct 15616301  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15616370 - 15616334
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaa 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15616370 ctgcctcttgtgcaggcacggacattatcattgctaa 15616334  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 15639415 - 15639375
Alignment:
Q  176 tttcacctgaaatataaaactcaa-cccatgagtatgatct 215  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15639415 tttcacctgaaatataaaactcaaccccatgagtatgatct 15639375  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 15639502 - 15639466
Alignment:
Q  46 ctaactcagactgtgtagggctatagctcaaatccct 82  Q
    |||||| ||||||||||||||||||||||||||||||    
T  15639502 ctaacttagactgtgtagggctatagctcaaatccct 15639466  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 39465207 - 39465126
Alignment:
Q  129 tgtcttcctctttctggatatgctgaggtaggtgcaatcctgta---ttttttcacctgaaatataaaactcaacccatgagt 208  Q
    ||||||||||| |||| |||||||| ||||||||||||||| ||   |  ||||| |||||||||||||| ||||||||||||    
T  39465207 tgtcttcctctgtctgaatatgctggggtaggtgcaatcctataccttcctttca-ctgaaatataaaacacaacccatgagt 39465126  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 12068491 - 12068554
Alignment:
Q  152 tgaggtaggtgcaatcctgtattttttcacctgaaatataaaactcaacccatgagtatgatct 215  Q
    |||||||||  |||||||||| | ||||| || ||||||||||||||| |||||| ||||||||    
T  12068491 tgaggtaggcacaatcctgtactgtttcatcttaaatataaaactcaaaccatgattatgatct 12068554  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 39457785 - 39457747
Alignment:
Q  177 ttcacctgaaatataaaactcaacccatgagtatgatct 215  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  39457785 ttcacctgaaatataaaactcagcccatgagtaagatct 39457747  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 15616266 - 15616205
Alignment:
Q  155 ggtaggtgcaatcctgtattttttcacctgaaatataaaactcaa-cccatgagtatgatct 215  Q
    |||||| | |||| |||| | ||||||||||||||| |||||||| ||||||||||||||||    
T  15616266 ggtaggcgtaatcatgtactgtttcacctgaaatattaaactcaaccccatgagtatgatct 15616205  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15608017 - 15607981
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaa 37  Q
    ||||||||||||||| || ||||||||||||||||||    
T  15608017 ctgcctcttgtgcaggcagggacattatcattgctaa 15607981  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15639535 - 15639499
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaa 37  Q
    ||||||||||||||| || ||||||||||||||||||    
T  15639535 ctgcctcttgtgcaggcagggacattatcattgctaa 15639499  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 20147231 - 20147198
Alignment:
Q  176 tttcacctgaaatataaaactcaacccatgagta 209  Q
    ||||||||||||||||||||||||||||||||||    
T  20147231 tttcacctgaaatataaaactcaacccatgagta 20147198  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 23294 - 23375
Alignment:
Q  129 tgtcttcctctttctggatatgctgaggtaggtgcaatcctgta---ttttttcacctgaaatataaaactcaacccatgagt 208  Q
    ||||||||||| |||| |||||||| ||||||||||||||| ||   |  ||||| |||||||||||||| ||||||||||||    
T  23294 tgtcttcctctgtctgaatatgctggggtaggtgcaatcctataccttcctttca-ctgaaatataaaacacaacccatgagt 23375  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 12082644 - 12082527
Alignment:
Q  1 ctgcctcttgtgcagacacggacattatcattgctaattgaaagtctaactcagactgtgtagggctatagctcaaatccctgtcacagttcatagaggc 100  Q
    |||||||||||||||||| |||| ||||  || ||||||  || || | ||||||||  |||||| ||| ||||  |||||||| | | ||||||||| |    
T  12082644 ctgcctcttgtgcagacatggaccttattttttctaattctaaatcgatctcagacttagtagggatattgctctcatccctgtaaaatttcatagagcc 12082545  T
Q  101 attctgcctcccttccaa 118  Q
     || ||||||||||||||    
T  12082544 tttttgcctcccttccaa 12082527  T

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