View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_high_7 (Length: 523)
Name: NF3064_high_7
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 9596669 - 9596488
Alignment:
| Q |
19 |
atgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtacagaaatatataagttcataagccaaaaaatgat |
118 |
Q |
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| T |
9596669 |
atgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtacagaaatatataagttcgtaagcgaaaaaatgat |
9596570 |
T |
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| Q |
119 |
ggaaattaattagaaattagaaattataccattttatatcgaattttctaatttctttccatgagagttttgttatatcccaaggtgat |
207 |
Q |
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| T |
9596569 |
ggaaattaattagaa-------attataccattatatatcgaattttctaatttcattccatgagagttttgttatatcccaaggtgat |
9596488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 403 - 511
Target Start/End: Complemental strand, 9595893 - 9595789
Alignment:
| Q |
403 |
cttcaaagtgttagggtgcacatgaattgagttcacgtacgtatacctactcaaaatgagtttatggagactgacgtgaacttcattcatgtatcttcaa |
502 |
Q |
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| T |
9595893 |
cttcaaagtgttagggtgcacatgaattgagttcacgta----tacctactcaaaatgagttcatggagactgacgtgaacttcattcatgtatcttcaa |
9595798 |
T |
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| Q |
503 |
ttttcatat |
511 |
Q |
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| T |
9595797 |
ttttcatat |
9595789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 9596463 - 9596425
Alignment:
| Q |
223 |
cgactaattcttattcaaattttcaatcagtacccatat |
261 |
Q |
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| T |
9596463 |
cgactaattcttattcaaattttcaatcagtacccatat |
9596425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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