View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_high_9 (Length: 503)

Name: NF3064_high_9
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_high_9
NF3064_high_9
[»] chr1 (23 HSPs)
chr1 (27-452)||(14664122-14664547)
chr1 (92-452)||(14654331-14654691)
chr1 (113-452)||(14669700-14670038)
chr1 (208-452)||(14705960-14706204)
chr1 (224-452)||(14683638-14683866)
chr1 (164-452)||(14708407-14708694)
chr1 (162-452)||(14716119-14716407)
chr1 (230-452)||(14652419-14652641)
chr1 (230-452)||(14662210-14662432)
chr1 (224-431)||(14676520-14676727)
chr1 (237-452)||(14681501-14681715)
chr1 (162-452)||(14674300-14674597)
chr1 (162-452)||(14679678-14679975)
chr1 (304-501)||(33988038-33988235)
chr1 (329-452)||(38175521-38175644)
chr1 (327-452)||(28366189-28366315)
chr1 (261-452)||(14667102-14667292)
chr1 (339-443)||(11872481-11872585)
chr1 (113-206)||(14676443-14676536)
chr1 (113-206)||(14683561-14683654)
chr1 (342-414)||(37422175-37422247)
chr1 (332-408)||(28698549-28698625)
chr1 (392-478)||(7448392-7448478)
[»] chr2 (28 HSPs)
chr2 (113-450)||(30731786-30732122)
chr2 (240-452)||(32917986-32918196)
chr2 (329-452)||(43850042-43850165)
chr2 (304-501)||(9026754-9026952)
chr2 (261-452)||(30733914-30734104)
chr2 (304-500)||(8973280-8973477)
chr2 (335-452)||(2841008-2841125)
chr2 (304-499)||(9030366-9030557)
chr2 (333-501)||(9008018-9008187)
chr2 (304-448)||(9020815-9020960)
chr2 (304-416)||(9023415-9023527)
chr2 (304-410)||(9032021-9032127)
chr2 (338-452)||(19232391-19232504)
chr2 (304-403)||(8979290-8979389)
chr2 (304-477)||(9016461-9016638)
chr2 (304-423)||(8984661-8984780)
chr2 (304-449)||(8992116-8992262)
chr2 (304-448)||(8988423-8988568)
chr2 (343-443)||(10763878-10763978)
chr2 (340-452)||(35701893-35702005)
chr2 (338-479)||(6471674-6471813)
chr2 (364-452)||(17225654-17225743)
chr2 (367-452)||(17275862-17275947)
chr2 (392-452)||(8912990-8913052)
chr2 (66-106)||(8979048-8979088)
chr2 (339-374)||(39814115-39814150)
chr2 (304-365)||(8975663-8975724)
chr2 (64-113)||(8995547-8995596)
[»] chr8 (14 HSPs)
chr8 (304-499)||(41841096-41841291)
chr8 (304-500)||(44878951-44879147)
chr8 (304-500)||(44880774-44880970)
chr8 (336-452)||(40054312-40054428)
chr8 (260-452)||(10944390-10944581)
chr8 (336-435)||(37682057-37682156)
chr8 (338-452)||(37679757-37679871)
chr8 (353-500)||(44582870-44583017)
chr8 (328-436)||(42555090-42555198)
chr8 (328-410)||(42220879-42220960)
chr8 (329-379)||(42872514-42872564)
chr8 (325-409)||(42092010-42092093)
chr8 (402-447)||(33577710-33577755)
chr8 (396-452)||(42554653-42554709)
[»] chr5 (7 HSPs)
chr5 (336-491)||(3643640-3643795)
chr5 (304-452)||(1716442-1716591)
chr5 (329-452)||(7524961-7525084)
chr5 (340-448)||(4103249-4103357)
chr5 (338-499)||(16037861-16038020)
chr5 (369-449)||(5350672-5350752)
chr5 (343-407)||(19261152-19261216)
[»] chr4 (17 HSPs)
chr4 (324-499)||(11652336-11652511)
chr4 (327-500)||(3461085-3461258)
chr4 (304-477)||(49108599-49108772)
chr4 (328-452)||(49106520-49106644)
chr4 (304-452)||(50077190-50077338)
chr4 (364-500)||(21503706-21503842)
chr4 (337-448)||(26998735-26998846)
chr4 (337-442)||(26984668-26984773)
chr4 (337-448)||(48205832-48205943)
chr4 (338-441)||(41013548-41013651)
chr4 (372-445)||(35806165-35806238)
chr4 (332-436)||(49533638-49533735)
chr4 (343-443)||(26982549-26982646)
chr4 (343-396)||(6431957-6432010)
chr4 (390-443)||(54677580-54677633)
chr4 (204-236)||(23267684-23267716)
chr4 (341-377)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (304-452)||(10795881-10796029)
chr6 (327-452)||(10791643-10791768)
chr6 (336-452)||(30521242-30521358)
chr6 (338-448)||(8875691-8875803)
chr6 (379-452)||(11333273-11333346)
chr6 (343-442)||(21216032-21216131)
chr6 (392-452)||(13136610-13136670)
[»] chr7 (2 HSPs)
chr7 (336-452)||(27134511-27134627)
chr7 (342-452)||(8128149-8128258)
[»] chr3 (1 HSPs)
chr3 (338-384)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (387-496)||(5447-5556)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 27 - 452
Target Start/End: Complemental strand, 14664547 - 14664122
Alignment:
Q  27 ttcttttctctttcgaagctgtttgttgttctatcaataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat 126  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664547 ttcttttctctttcgaagctgtttgttgttctatcgataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat 14664448  T
Q  127 tatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14664447 tatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaatatcctctgcttggtaattgct 14664348  T
Q  227 ctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtcca 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14664347 ctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgtcca 14664248  T
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacga 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||    
T  14664247 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacga 14664148  T
Q  427 tattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||    
T  14664147 tattaaattacttttttgagggggag 14664122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 92 - 452
Target Start/End: Complemental strand, 14654691 - 14654331
Alignment:
Q  92 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654691 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 14654592  T
Q  192 tctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 291  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654591 tctatgttggcaatatcctctgcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 14654492  T
Q  292 agaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagg 391  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14654491 agaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14654392  T
Q  392 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  14654391 ttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggag 14654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 113 - 452
Target Start/End: Complemental strand, 14670038 - 14669700
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 212  Q
    ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||| || |||||    
T  14670038 atgaccattaccattaccattgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggctgtatgttggca-taacctct 14669940  T
Q  213 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  14669939 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 14669840  T
Q  313 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggccc 412  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  14669839 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggacc 14669740  T
Q  413 aatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||  ||||||||||||||||||||||||||||||||||    
T  14669739 aatggttcacacgatattaaattacttttttgagggggag 14669700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 208 - 452
Target Start/End: Original strand, 14705960 - 14706204
Alignment:
Q  208 cctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatat 307  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  | ||| ||||    
T  14705960 cctctgcttggtaattgctctttgttggcaacacatgcatacaatgagaaatagtcccacatcgagcagtcaagaaagaaactgagaacgtttctgatat 14706059  T
Q  308 aaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgt 407  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14706060 aaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 14706159  T
Q  408 ggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    || ||||||  ||||||||||||||||||||||||||||||||||    
T  14706160 ggaccaatggttcacacgatattaaattacttttttgagggggag 14706204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 224 - 452
Target Start/End: Original strand, 14683638 - 14683866
Alignment:
Q  224 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 323  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14683638 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14683737  T
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcaca 423  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||    
T  14683738 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcaca 14683837  T
Q  424 cgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||||||    
T  14683838 cgatattaaattacttttttgagggggag 14683866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 164 - 452
Target Start/End: Original strand, 14708407 - 14708694
Alignment:
Q  164 gatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtc 263  Q
    ||||||||| ||||||| ||||||||  ||| ||| |||| ||| ||||||||||||| ||||||||||||| ||| |||| || |||||||||||||||    
T  14708407 gatgaattgctgaaatgatttagtgggatctttgttggca-tatactctgcttggtaattgctctttgttggtaacgcatgtgtgcaatgagaaatagtc 14708505  T
Q  264 ccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaag 363  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||  ||  || ||||||||||||||||||||||||||||||||||||||||    
T  14708506 ccacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggctaag 14708605  T
Q  364 atcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  14708606 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggag 14708694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 162 - 452
Target Start/End: Original strand, 14716119 - 14716407
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatag 261  Q
    |||||||||||||||||| | || |||| |||||||| |    ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14716119 tggatgaattggtgaaatacgttggtgggctctatgttgcg--tatgctctgcttggaaattgctctttgttggcaacacatgcgtacaatgagaaatag 14716216  T
Q  262 tcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggcta 361  Q
    |||||||| ||||||||| ||||  ||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  14716217 tcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggcta 14716316  T
Q  362 agatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  14716317 agatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgagggggag 14716407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 14652419 - 14652641
Alignment:
Q  230 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14652419 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14652518  T
Q  330 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 429  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  14652519 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 14652618  T
Q  430 taaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||    
T  14652619 taaattacttttttgagggggag 14652641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 14662210 - 14662432
Alignment:
Q  230 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14662210 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14662309  T
Q  330 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 429  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  14662310 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 14662409  T
Q  430 taaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||    
T  14662410 taaattacttttttgagggggag 14662432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 224 - 431
Target Start/End: Original strand, 14676520 - 14676727
Alignment:
Q  224 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 323  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14676520 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14676619  T
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcaca 423  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||    
T  14676620 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcaca 14676719  T
Q  424 cgatatta 431  Q
    ||||||||    
T  14676720 cgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 237 - 452
Target Start/End: Original strand, 14681501 - 14681715
Alignment:
Q  237 aacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaact 336  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||| ||||||||    
T  14681501 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagcccatttttcaact 14681599  T
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 436  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||    
T  14681600 tatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14681699  T
Q  437 cttttttgagggggag 452  Q
    ||||||||||||||||    
T  14681700 cttttttgagggggag 14681715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 162 - 452
Target Start/End: Original strand, 14674300 - 14674597
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 252  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14674300 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14674398  T
Q  253 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 352  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14674399 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14674497  T
Q  353 ttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  14674498 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggag 14674597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 162 - 452
Target Start/End: Original strand, 14679678 - 14679975
Alignment:
Q  162 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 252  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14679678 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14679776  T
Q  253 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 352  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14679777 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14679875  T
Q  353 ttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  14679876 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggag 14679975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 304 - 501
Target Start/End: Original strand, 33988038 - 33988235
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 33988137  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 501  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||     ||  |||||||||||||||| |||| || |||||||| ||||||    
T  33988138 atgtggctcaatgagtcacacgatattaaattacttttttaagggggagaggccatttcaatagcttgctattgggtttttcaagtgtcgcttatgct 33988235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 329 - 452
Target Start/End: Complemental strand, 38175644 - 38175521
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgata 38175545  T
Q  429 ttaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||    
T  38175544 ttaaattacttttttgagggggag 38175521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 327 - 452
Target Start/End: Complemental strand, 28366315 - 28366189
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtg-gcccaatgagtcacacg 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacg 28366216  T
Q  426 atattaaattacttttttgagggggag 452  Q
    |||||||||||||||||| ||||||||    
T  28366215 atattaaattacttttttaagggggag 28366189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 261 - 452
Target Start/End: Complemental strand, 14667292 - 14667102
Alignment:
Q  261 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 360  Q
    ||||||||||||| |||||||||| |||||||||| |||||  |||||||||||||||    || || ||  ||||||||||||||||||||||||||||    
T  14667292 gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagcaggatctc-atgttgtaactcatacctttctcggccttttggct 14667194  T
Q  361 aagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||  ||||| ||||||||||||||||||  ||||||||    
T  14667193 aagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaattactttttctagggggag 14667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 443
Target Start/End: Complemental strand, 11872585 - 11872481
Alignment:
Q  339 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattact 438  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  439 ttttt 443  Q
    |||||    
T  11872485 ttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 14676443 - 14676536
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 206  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14676443 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14676536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 14683561 - 14683654
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 206  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14683561 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  342 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaa 414  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  332 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtg 408  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || ||||||  ||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 478
Target Start/End: Complemental strand, 7448478 - 7448392
Alignment:
Q  392 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattga 478  Q
    |||||||||||||||||| | ||||| | | |||||||| |||||||||||||| ||| || ||  |||||||||| ||||||||||    
T  7448478 ttaatatctgatatgtggtcaaatgaattatacgatattgaattacttttttgaagggaagaaaccatcacaatagtttgctattga 7448392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 113 - 450
Target Start/End: Original strand, 30731786 - 30732122
Alignment:
Q  113 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 212  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| || |||||    
T  30731786 atgaccattaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca-taacctct 30731884  T
Q  213 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  30731885 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 30731984  T
Q  313 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggccc 412  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||    
T  30731985 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggacc 30732084  T
Q  413 aatgagtcacacgatattaaattacttttttgaggggg 450  Q
    ||||  ||||||||||||||||||||||||||||||||    
T  30732085 aatggttcacacgatattaaattacttttttgaggggg 30732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 240 - 452
Target Start/End: Original strand, 32917986 - 32918196
Alignment:
Q  240 acatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcat 339  Q
    ||||||||||| |  ||||||||||||||||||| | |||||||||||||  |||||||| |  ||||||||||||||||||||| | | ||||||||||    
T  32917986 acatgcgtacagtaggaaatagtcccacatcgaggaatcaagaaagcaacatagaaaatg-cagatataaaagcagcagctagtcta-cattcaactcat 32918083  T
Q  340 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactt 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||||||    
T  32918084 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactt 32918183  T
Q  440 ttttgagggggag 452  Q
    |||||||||||||    
T  32918184 ttttgagggggag 32918196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 43850042 - 43850165
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgata 43850141  T
Q  429 ttaaattacttttttgagggggag 452  Q
    |||||| |||||||||||||||||    
T  43850142 ttaaatcacttttttgagggggag 43850165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 304 - 501
Target Start/End: Original strand, 9026754 - 9026952
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9026754 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9026853  T
Q  404 atgtggcccaatgagtcac-acgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 501  Q
      ||||||||||| ||||| ||  |||||||||||||||||||| |||||  |  ||  |||||||||||||||| ||||||| |||||||||||||||    
T  9026854 tagtggcccaatgggtcacaacagtattaaattacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgct 9026952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 261 - 452
Target Start/End: Original strand, 30733914 - 30734104
Alignment:
Q  261 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 360  Q
    ||||||||||||| |||||||||| ||| |||||| |||||  |||||||||||||||    || || ||  |||| |||||||||||||||||||||||    
T  30733914 gtcccacatcgaggagtcaagaaaacaagtgagaacatgtcagatataaaagcagcaggatctc-atgttgtaacttatacctttctcggccttttggct 30734012  T
Q  361 aagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||||||||||||| ||||||||    
T  30734013 aagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattactttttttagggggag 30734104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 500
Target Start/End: Original strand, 8973280 - 8973477
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 8973379  T
Q  404 atgtggcccaatgagtcac-acgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
      ||||||||||| ||||| || |||||||||||||||||| ||||||||  |  ||  |||||||||||| ||| ||||||| ||||| || |||||    
T  8973380 tagtggcccaatgggtcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgc 8973477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 335 - 452
Target Start/End: Complemental strand, 2841125 - 2841008
Alignment:
Q  335 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||  ||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaat 2841026  T
Q  435 tacttttttgagggggag 452  Q
    ||||||||||||||||||    
T  2841025 tacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 304 - 499
Target Start/End: Original strand, 9030366 - 9030557
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||     
T  9030366 atataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgag 9030465  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 499  Q
    | ||||| ||||| |||||||  ||||||||||||||||||||||||||   ||    |||||||||||||||| | ||||| |||||||||||||    
T  9030466 aagtggctcaatgggtcacacagtattaaattacttttttgagggggagaggtt----caatagcttgctattgggcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 333 - 501
Target Start/End: Original strand, 9008018 - 9008187
Alignment:
Q  333 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtca-cacgatatta 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  432 aattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 501  Q
    |||||||||||||||||||||     ||  ||||| |||| ||||| ||||||| |||||||||||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgct 9008187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 304 - 448
Target Start/End: Original strand, 9020815 - 9020960
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||| ||  ||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||     
T  9020815 atataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgag 9020914  T
Q  404 atgtggcccaatgagtcac-acgatattaaattacttttttgaggg 448  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  9020915 atgtggcccaatgggtcactacagtattaaattacttttttgaggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 304 - 416
Target Start/End: Original strand, 9023415 - 9023527
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  404 atgtggcccaatg 416  Q
      |||||||||||    
T  9023515 tagtggcccaatg 9023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 9032021 - 9032127
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  9032021 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9032120  T
Q  404 atgtggc 410  Q
    |||||||    
T  9032121 atgtggc 9032127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 19232504 - 19232391
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 437  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||| || ||||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  438 ttttttgagggggag 452  Q
     ||||||||||||||    
T  19232405 ctttttgagggggag 19232391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 8979290 - 8979389
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  8979290 atataaaagcataagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 477
Target Start/End: Original strand, 9016461 - 9016638
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---aggttaatatct 400  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||   || |||||||||    
T  9016461 atataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatct 9016560  T
Q  401 gatatgtggcccaatgagtcac-acgatattaaattacttttttgagggggagtaattatcacaatagcttgctattg 477  Q
    |||  ||||||||||| ||||| ||  ||||||||||||||||||||||||||  |  ||  ||||||||||||||||    
T  9016561 gattagtggcccaatgggtcacaacagtattaaattacttttttgagggggagagacaatttcaatagcttgctattg 9016638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 8984661 - 8984780
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||    
T  8984661 atataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T
Q  404 atgtggcccaatgagtcaca 423  Q
      |||||| |||| ||||||    
T  8984761 tagtggcctaatgggtcaca 8984780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 449
Target Start/End: Original strand, 8992116 - 8992262
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| || | ||||||||||    
T  8992116 atataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgat 8992215  T
Q  404 atgtggcccaatgagtcac-acgatattaaattacttttttgagggg 449  Q
      ||||||||||| ||||| |  ||||||||||||||||||||||||    
T  8992216 tagtggcccaatgggtcacaataatattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 448
Target Start/End: Original strand, 8988423 - 8988568
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||  ||| ||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||    
T  8988423 atataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T
Q  404 atgtggcccaatgagtcac-acgatattaaattacttttttgaggg 448  Q
      ||| | |||||  || | || |||||||||||||||||||||||    
T  8988523 cagtgactcaatggttctcaacaatattaaattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 443
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 442  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||||   || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  443 t 443  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 452
Target Start/End: Original strand, 35701893 - 35702005
Alignment:
Q  340 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactt 439  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| || ||||||| |||||||||| ||||  |||||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  440 ttttgagggggag 452  Q
    |||||||||||||    
T  35701993 ttttgagggggag 35702005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 479
Target Start/End: Complemental strand, 6471813 - 6471674
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 437  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||  || | ||||  ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  438 ttttttgagggggagtaattatcacaatagcttgctattgag 479  Q
    |||||| ||||| || | | |||| ||||| |||||||||||    
T  6471714 tttttt-aggggaagaagtcatcataatagtttgctattgag 6471674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 17225743 - 17225654
Alignment:
Q  364 atcaagtgtagtatctgttctt-atcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||| || ||| | |||||| ||||||| ||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgaggaggag 17225654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 17275862 - 17275947
Alignment:
Q  367 aagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||  ||||||||||| | ||| | | |||||||| ||||||  |||||||||||| |||||| ||||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgagggggag 17275947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 8912990 - 8913052
Alignment:
Q  392 ttaatatctgatatgtggcccaatgagtcacac--gatattaaattacttttttgagggggag 452  Q
    ||||||| | |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  8912990 ttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggag 8913052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 8979048 - 8979088
Alignment:
Q  66 atctttaattcctcaactttagttttacttatgcattaatg 106  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  8979048 atctttaattcttcaactttagttttacctatgcattaatg 8979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  339 tacctttctcggccttttggctaagatcaagtgtag 374  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 8975663 - 8975724
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagat 365  Q
    |||||||||||  ||| |||||| |||||||||||||  |||||  ||||||||||||||||    
T  8975663 atataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 8995547 - 8995596
Alignment:
Q  64 taatctttaattcctcaactttagttttacttatgcattaatgaccacta 113  Q
    ||||||| ||||| |||||||||||||||  |||||||||||| ||||||    
T  8995547 taatcttcaattcttcaactttagttttatctatgcattaatggccacta 8995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 304 - 499
Target Start/End: Complemental strand, 41841291 - 41841096
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41841291 atataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 41841192  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 499  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||| |   | | |||||||||||||||| | |||||||||||||||||||    
T  41841191 atgtggtccaatgggtcacacgatattaaattacttttttgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatg 41841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 304 - 500
Target Start/End: Original strand, 44878951 - 44879147
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    ||||||||||||  || || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44878951 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 44879050  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44879051 atgtggctcaatgggtcacatgatattaaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 304 - 500
Target Start/End: Complemental strand, 44880970 - 44880774
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    ||||||||||||  || || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44880970 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 44880871  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44880870 atgtggctcaatgggtcacatgatattaaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44880774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 40054312 - 40054428
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  436 acttttttgagggggag 452  Q
    |||||||||||||||||    
T  40054412 acttttttgagggggag 40054428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 260 - 452
Target Start/End: Complemental strand, 10944581 - 10944390
Alignment:
Q  260 agtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggc 359  Q
    |||||||||||||| | |||||||| |||| ||||| |||||  |||||||||||  ||  ||  ||| ||  ||||||||||||||||| |||||||||    
T  10944581 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcgaccttttggc 10944483  T
Q  360 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||  ||||||||||||||||||||||||||| ||||||    
T  10944482 taagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaattacttttttgatggggag 10944390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 37682057 - 37682156
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 435  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 338 - 452
Target Start/End: Original strand, 37679757 - 37679871
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  438 ttttttgagggggag 452  Q
    ||| |||||||||||    
T  37679857 tttattgagggggag 37679871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 500
Target Start/End: Original strand, 44582870 - 44583017
Alignment:
Q  353 ttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||  |   | |||||||||||||||||||||||| |||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgagggagag 44582969  T
Q  453 taattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
     | | |||||||||| |||||||||  ||| | |||||||| ||||||    
T  44582970 aagtcatcacaatagtttgctattggattttttgagtgtcgtctatgc 44583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 436
Target Start/End: Complemental strand, 42555198 - 42555090
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgat 427  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||||||  |||||| |||||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgat 42555099  T
Q  428 attaaatta 436  Q
    |||||||||    
T  42555098 attaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 42220960 - 42220879
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggc 410  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  42220960 ctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtggc 42220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 42092010 - 42092093
Alignment:
Q  325 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtgg 409  Q
    ||||||| |||||||||||||||  |||||||| |||| || ||||||| ||| |||||||||||| ||||||||||||||||||    
T  42092010 catctttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 33577755 - 33577710
Alignment:
Q  402 atatgtggcccaatgagtcacacgatattaaattacttttttgagg 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  33577755 atatgtggcctaatgagtcacacaatattaaattacttttttgagg 33577710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 42554709 - 42554653
Alignment:
Q  396 tatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||||||||||||  |||||| | |||||||||||||||| |||||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgagggggag 42554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 336 - 491
Target Start/End: Original strand, 3643640 - 3643795
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T
Q  436 acttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgt 491  Q
    |||||||| |||||||| || ||||||||||||||||||||| |||||||||||||    
T  3643740 acttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgt 3643795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 452
Target Start/End: Complemental strand, 1716591 - 1716442
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    ||||||||  || ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1716591 atataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 1716492  T
Q  404 atgtgg-cccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||| || |||| |||||||||||||||||||||||||| ||||||||    
T  1716491 atgtggtccaaatgggtcacacgatattaaattacttttttaagggggag 1716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 7524961 - 7525084
Alignment:
Q  329 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 428  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  ||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgata 7525060  T
Q  429 ttaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||    
T  7525061 ttaaattacttttttgagggggag 7525084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  340 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagt-cacacgatattaaattact 438  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaat-agtccacacgatattaaattgct 4103347  T
Q  439 tttttgaggg 448  Q
    ||||| ||||    
T  4103348 ttttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 499
Target Start/End: Original strand, 16037861 - 16038020
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 437  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | |||| |||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  438 ttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 499  Q
    |||||||| ||| |  | | ||||||| ||||||||| || | |||||| ||||||| ||||    
T  16037959 ttttttgaagggaaaaagtcatcacaagagcttgctaatgggcttctcgtgtgtcgcttatg 16038020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 449
Target Start/End: Original strand, 5350672 - 5350752
Alignment:
Q  369 gtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggg 449  Q
    ||||||||||| || ||||||| ||||||||||||||||||  |||||   ||||||||||||||||  ||| ||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgagggg 5350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgt 407  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| | | ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 324 - 499
Target Start/End: Complemental strand, 11652511 - 11652336
Alignment:
Q  324 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcaca 423  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  11652511 ccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcaca 11652412  T
Q  424 cgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 499  Q
    ||||||||||||| ||||||||||||||| |   |   |||||||||||||||| | |||| ||||||||||||||    
T  11652411 cgatattaaattatttttttgagggggagaagccactccaatagcttgctattgggcttcttgagtgtcgcctatg 11652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 327 - 500
Target Start/End: Complemental strand, 3461258 - 3461085
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacga 426  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacga 3461159  T
Q  427 tattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
    ||||||||||||||||| |||||||| |   ||  |||||||||||||||| ||||||||||||||| ||||||    
T  3461158 tattaaattacttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgc 3461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 304 - 477
Target Start/End: Complemental strand, 49108772 - 49108599
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||| ||| ||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49108772 atataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 49108673  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattg 477  Q
    ||||| | ||||| ||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||    
T  49108672 atgtgactcaatgggtcacacgatattaaattacttttttgagggggagaagtcatcacagtagcttgctattg 49108599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 328 - 452
Target Start/End: Complemental strand, 49106644 - 49106520
Alignment:
Q  328 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 49106545  T
Q  428 attaaattacttttttgagggggag 452  Q
    |||||||||||||||||||||||||    
T  49106544 attaaattacttttttgagggggag 49106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 304 - 452
Target Start/End: Complemental strand, 50077338 - 50077190
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50077338 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 50077239  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||  ||||||  ||||| ||||||||||||||||||||||||||||    
T  50077238 atgtgttccaatggttcacatgatattaaattacttttttgagggggag 50077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 500
Target Start/End: Original strand, 21503706 - 21503842
Alignment:
Q  364 atcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcaca 463  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| | | ||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgagggggagaagtcatcaca 21503805  T
Q  464 atagcttgctattgagtttctcgagtgtcgcctatgc 500  Q
    |||||||||||||||  ||||| |||||||| |||||    
T  21503806 atagcttgctattgaacttctcaagtgtcgcttatgc 21503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 337 - 448
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  437 cttttttgaggg 448  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  437 cttttt 442  Q
    ||||||    
T  26984673 cttttt 26984668  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 337 - 448
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  337 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 436  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| |  ||||||||| |||||||| ||| ||  | ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  437 cttttttgaggg 448  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 441
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 437  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| | |||||||||||||||||| |||| |  ||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  438 tttt 441  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  372 tagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttga 445  Q
    |||||| |||||||||||| ||||||| ||||||||   | |||||||| ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 436
Target Start/End: Complemental strand, 49533735 - 49533638
Alignment:
Q  332 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatatta 431  Q
    |||| |||||||||||||||| || ||||||||||||||| | |||||||||||||     |||||||||||||||  | ||||  ||||||||||||||    
T  49533735 caacccatacctttctcggccctt-ggctaagatcaagtgca-tatctgttcttat-----taatatctgatatgttactcaataggtcacacgatatta 49533643  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 443
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 442  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| || ||| ||||| ||||||||  |||||| | ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaat 396  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| || |||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 54677580 - 54677633
Alignment:
Q  390 ggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 443  Q
    ||||||| | |||||||||| | ||||  |||||||||||||||||||||||||    
T  54677580 ggttaatgtttgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 23267716 - 23267684
Alignment:
Q  204 atatcctctgcttggtaactgctctttgttggc 236  Q
    |||||||||||||||||| ||||||||||||||    
T  23267716 atatcctctgcttggtaattgctctttgttggc 23267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  341 cctttctcggccttttggctaagatcaagtgtagtat 377  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 304 - 452
Target Start/End: Complemental strand, 10796029 - 10795881
Alignment:
Q  304 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 403  Q
    |||||||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10796029 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 10795930  T
Q  404 atgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10795929 atgtgacccaatgggtcacacgatattaaattacttttttgagggggag 10795881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 327 - 452
Target Start/End: Complemental strand, 10791768 - 10791643
Alignment:
Q  327 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacga 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||| ||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  427 tattaaattacttttttgagggggag 452  Q
    ||||||||||||||||||||||||||    
T  10791668 tattaaattacttttttgagggggag 10791643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 30521242 - 30521358
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 435  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  436 acttttttgagggggag 452  Q
      |||||||||||||||    
T  30521342 tattttttgagggggag 30521358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 338 - 448
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat--t 435  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||   | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  436 acttttttgaggg 448  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 11333273 - 11333346
Alignment:
Q  379 tgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||| |||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgagggggag 11333346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  343 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 442  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||| ||||||||| ||||||||| |||||| |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 13136610 - 13136670
Alignment:
Q  392 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 452  Q
    |||||||||||||||||| ||||||   ||||||||||||||||||||||||||| |||||    
T  13136610 ttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggag 13136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 27134511 - 27134627
Alignment:
Q  336 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 435  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  | |||||||||||||||||| | ||||||||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  436 acttttttgagggggag 452  Q
    |||||||||||||||||    
T  27134611 acttttttgagggggag 27134627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 8128149 - 8128258
Alignment:
Q  342 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttt 441  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | || ||||||| |||||||||| |||||| ||||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatg-gtcacacaatattaaatttatttc 8128247  T
Q  442 ttgagggggag 452  Q
    |||||||||||    
T  8128248 ttgagggggag 8128258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  338 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 384  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 5447 - 5556
Alignment:
Q  387 tcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcg 486  Q
    |||| |||||||||||||| ||| |||||   |||||||||||||||||  |||||||||| ||||     | |||||||||||||||||| || ||||     
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctca 5546  T
Q  487 agtgtcgcct 496  Q
    ||||||||||    
T  5547 agtgtcgcct 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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