View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_16 (Length: 430)
Name: NF3064_low_16
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 28189853 - 28189458
Alignment:
| Q |
18 |
ataatatacatatcttaaattgttttaaatttgaagtaaaatcttcagtatatgacaaacacnnnnnnnnnnnnnnn-gaatactcttgaaaataaaagg |
116 |
Q |
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| T |
28189853 |
ataatatacatatcttaaattgttttaaatttgaagtaaaatcttcagtatatgacaaacacaaaaaaagaaaaaaaagaatact--tgaaaataaaagg |
28189756 |
T |
|
| Q |
117 |
atttataaccatcagactatatctaaaataaacttcaattatacgcaccgttacatttttaaacatacaatgtcatgtcattttaaataacttgatttaa |
216 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
28189755 |
atttataaccatcacactatatctaaa-taaacttcaattatacgcaccgttacatttttatacatacaatttcatgtcattttaaataacttgatttaa |
28189657 |
T |
|
| Q |
217 |
catcactaccaaccaaccaaaacaaagcaataagccttaataaaccacccttcaaacaaaggttgaataaaccatttttgacaaaagtaatgcttaaata |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28189656 |
catcactaccaaccaa----aacaaagcaataagccttaataaaccacccttcaaacaaaggttgaataaaccatttttgacaaaagtaatgcttaaata |
28189561 |
T |
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| Q |
317 |
aaggaaataaaaaatagagacatgaaattcaattttgttattttcaacgtagtttcaaaacacatttacatcaatttttcatgatgaatgaattatcctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28189560 |
aaggaaataaaaaatagagacatgaaattcaattttgttattttcaacatagtttcaaaacacatttacatcaatttttcatgatgaatgaattatcctt |
28189461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 19540683 - 19540763
Alignment:
| Q |
170 |
catttttaaacatacaatgtcatgtcattttaaataacttgatttaacatcactaccaaccaaccaaaacaaagcaataag |
250 |
Q |
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| T |
19540683 |
catttttaaacatacaatgccacgtcattttaaataatttggcttaataccactaccaaccaaccaaaacaaagcaataag |
19540763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 18476184 - 18476128
Alignment:
| Q |
194 |
tcattttaaataacttgatttaacatcactaccaaccaaccaaaacaaagcaataag |
250 |
Q |
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| T |
18476184 |
tcattttaaataatttggtttaacaccactaccaaccaaccaaaacaaagcaataag |
18476128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 400
Target Start/End: Complemental strand, 18476130 - 18476007
Alignment:
| Q |
275 |
aaggttgaataaaccatttttgacaaaagtaatgcttaaataaaggaaataaaaaatagagacatgaaattcaattttgttattttcaacgtagtttcaa |
374 |
Q |
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|||||||| ||||||| |||| ||| || |||| | |||||| |||||| ||||||||||||| ||||| ||||| ||| |||||| |||||||| |
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| T |
18476130 |
aaggttgattaaaccaatttttccaagaggaatgttggaataaattaaataagaaatagagacatgtaattctattttatta--ttcaacatagtttcag |
18476033 |
T |
|
| Q |
375 |
aacacatttacatcaatttttcatga |
400 |
Q |
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| T |
18476032 |
aagacatttacatcaaatttccatga |
18476007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 24886888 - 24886818
Alignment:
| Q |
328 |
aaatagagacatgaaattcaattttgttattttcaacgtagtttcaaaacacatttacatcaatttttcatga |
400 |
Q |
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||||||||||||||||||| ||||| ||| |||||| ||||| | |||||||||||||||| ||| ||||| |
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| T |
24886888 |
aaatagagacatgaaattcgattttatta--ttcaacaaagttttagaacacatttacatcaaatttccatga |
24886818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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