View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_17 (Length: 404)
Name: NF3064_low_17
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 37006962 - 37006576
Alignment:
| Q |
9 |
ttgttttttgggattcttaactatcatacttaaggacttgagaatatcagacaccaattttgaaataacaaagaaagaacaagtaccttctaatgaaagt |
108 |
Q |
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| T |
37006962 |
ttgttttttgggattcttaactatcatacttaagaacttgagaatatcagacaccaattttgaaataacaaagaaagaacaagtaccttctaatgaaagt |
37006863 |
T |
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| Q |
109 |
accaatgaaaatgctggtaggttcatttttaacgagtcacttatttttctaccgggcactacaattttgcttgttcaactcatagcaatttttacgagtt |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006862 |
accaatgaaaatgccggtaggttcatttttaacgagtcacttatttttctaccgggcactacaattttgcttgttcaactcatagcaatttttacgagtt |
37006763 |
T |
|
| Q |
209 |
ggttgggatggaaaccactagtaaagagtggtgctgatggatatggagcaggagaggttttttgtagtgcatatgtgattttatgctacttgccattttt |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37006762 |
ggttgggatggaaaccactaataaagagtggtgctgatggatatggagcaggagaggttttttgtagtgcatatgtggttttatgctacttgccattttt |
37006663 |
T |
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| Q |
309 |
gaaaggattgtttgggaaaggaaaatatgggatacccttgtctacaatatgcaaatcaatggtgctagctttactatttgttcattt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006662 |
gaaaggattgtttgggaaaggaaaatatgggatacccttgtctacaatatgcaaatcaatggtgctagctttactatttgttcattt |
37006576 |
T |
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