View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_22 (Length: 353)
Name: NF3064_low_22
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 23428370 - 23428705
Alignment:
| Q |
1 |
ctaggtttacttaactatcatgatttgatactatatgtgtactctcttgttgatttatatttatttatatcatatagaacaacaataccaaaaataggct |
100 |
Q |
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| T |
23428370 |
ctaggtttacttaaccatcatgatttgatactatatgtgtactctcttgttgatttatatttatttatatcatatagaacaacaataccaaaaataggct |
23428469 |
T |
|
| Q |
101 |
gctaaggaataagtactatcttattaaaataataatagtaaaggatagaaatttaattatcaaaagtacaaaaaacactcgggtaaaaattacttttgaa |
200 |
Q |
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| T |
23428470 |
gctaaggaataagtactatcttattaaaataataatagtaaaggatagaaatttaaatatcaaaagtacaaaaaacactcgggtaaaaattacttttgaa |
23428569 |
T |
|
| Q |
201 |
gtcggttttatatccgacttatatatgaccgacttgataaactattttaatttgaagtctacgtttcatccgattttaaaccgggtaccccatttaaatg |
300 |
Q |
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| T |
23428570 |
gtcggttttatatccgacttatatatgaccgacttaataaactattttaatttgaagtctacgttacatccgattttaaaccgggtaccccatttaaatg |
23428669 |
T |
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| Q |
301 |
tcattaattaaattggttcaccctacttataaaagg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
23428670 |
tcattaattaaattggttcaccctacttataaaagg |
23428705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 28842043 - 28841965
Alignment:
| Q |
181 |
gggtaaaaattacttttgaagtcggttttatatccgacttatatatgaccgacttgataaactattttaatttgaagtcta |
261 |
Q |
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|||| ||||| |||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||| ||||||| |
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| T |
28842043 |
gggtgaaaatgactttttaagtcggttc-atatccgacttataggtgaccgacttaat-aactattttaattttaagtcta |
28841965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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