View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_24 (Length: 348)
Name: NF3064_low_24
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 38165199 - 38164868
Alignment:
| Q |
1 |
atagcaaccaccacatgactttccatcattaaacaaagcagtactcaatgcagctgtttttattccataaccatctttgtacaagtctccatacccacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38165199 |
atagcaaccaccacatgactttccatcattaaacaaagcagtactcaatgcagctgtttttattccataaccatctttgtacaagtctccatacccacat |
38165100 |
T |
|
| Q |
101 |
gcaccccctacaagtacagacaaattcaacaagttaattttcacggttctaattaaactgctctatgtaactgtaatagcatgaatatagcaggttagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| |
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| T |
38165099 |
gcaccccctacaagtacagacaaattcaacaagttaattttcacggttctaattaaattgctctacgtaattgcaatagcatgaatatagcaggttagga |
38165000 |
T |
|
| Q |
201 |
agnnnnnnnnnnataaataatgagaaaaacacacacaagacaaagtgtggttgcannnnnnnacccatagttcctgaggcatcacttccaccatagaaag |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38164999 |
agttttttttttataaataatgagaaaaacacacacaagacaaagtgtagttgcatttttttacccatagttcctgaggcatcacttccaccatagaaag |
38164900 |
T |
|
| Q |
301 |
ttgcatgagctttctgccaagctgctgattct |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38164899 |
ttgcatgagctttctgccaagctgctgattct |
38164868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 8375318 - 8375354
Alignment:
| Q |
22 |
tccatcattaaacaaagcagtactcaatgcagctgtt |
58 |
Q |
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| T |
8375318 |
tccatcattaaacaaagcagtacttaatgcagctgtt |
8375354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45507033 - 45507147
Alignment:
| Q |
1 |
atagcaaccaccacatgactttccatcattaaacaaagcagtactcaatgcagctgtttttattccataaccatctttgtacaagtctccatacccacat |
100 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||| | |||||| |||||| |
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| T |
45507033 |
atagcaaccaccacatgacttcccatcattaaacaaagcagtactcaatgcagctgattttataccatatccatctgtgtacagatttccataaccacat |
45507132 |
T |
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| Q |
101 |
gcaccccctacaagt |
115 |
Q |
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||||| ||||||||| |
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| T |
45507133 |
gcaccacctacaagt |
45507147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45512493 - 45512607
Alignment:
| Q |
1 |
atagcaaccaccacatgactttccatcattaaacaaagcagtactcaatgcagctgtttttattccataaccatctttgtacaagtctccatacccacat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||| | |||||| |||||| |
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| T |
45512493 |
atagcaaccaccacatgacttcccatcattaaacaaagcagtactcaatgcagctgattttataccatatccatctgtgtacagatttccataaccacat |
45512592 |
T |
|
| Q |
101 |
gcaccccctacaagt |
115 |
Q |
| |
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||||| ||||||||| |
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| T |
45512593 |
gcaccacctacaagt |
45512607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 45507224 - 45507281
Alignment:
| Q |
263 |
acccatagttcctgaggcatcacttccaccatagaaagttgcatgagctttctgccaa |
320 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45507224 |
acccattgttcctgaggcatcacttccaccatagaaagttgcatgagctgactgccaa |
45507281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 45512684 - 45512741
Alignment:
| Q |
263 |
acccatagttcctgaggcatcacttccaccatagaaagttgcatgagctttctgccaa |
320 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45512684 |
acccattgttcctgaggcatcacttccaccatagaaagttgcatgagctgactgccaa |
45512741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 22314863 - 22314910
Alignment:
| Q |
263 |
acccatagttcctgaggcatcacttccaccatagaaagttgcatgagc |
310 |
Q |
| |
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|||||| ||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
22314863 |
acccattgttccagaggcatcactaccaccatagaaagtagcatgagc |
22314910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 18301745 - 18301789
Alignment:
| Q |
263 |
acccatagttcctgaggcatcacttccaccatagaaagttgcatg |
307 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
18301745 |
acccattgttcctgatgcatcacttcctccatagaaagttgcatg |
18301789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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