View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_25 (Length: 340)
Name: NF3064_low_25
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 47662333 - 47662012
Alignment:
| Q |
1 |
tttgtttcttactttactttggatagaatggataggaaatgttatttttgttactaaaggaaatgctttgtttggttactaatatatattttttcacttt |
100 |
Q |
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| T |
47662333 |
tttgtttcttactttactttggatagaatggataggaaatgttattttt-ttactaaaggaaatgctttgtttggttactaatatatattttttcacttt |
47662235 |
T |
|
| Q |
101 |
tgaatataacaacgctcgaaggagtggtcaatatttatttaccggttaaaaagactctgttccactcacataaccatgacaa-gtgttagcactaattag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
47662234 |
tgaatataacaacgctcgaaggagtggtcaatatttatttaccggttaaaaagactctgttccattcacataaccatgacaaagtgttagcactaattag |
47662135 |
T |
|
| Q |
200 |
caaaataagtagagatgactaaaaatgaccatcatcttcacattgtatcttttcctctccttcaacttaatctatgcctctcgccctaatgtcgagtttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47662134 |
caaaataagtagagatgactaaaaatgaccatcatcttcacattgtatcttttcctttccttcaacttaatctatgcctctcgccctaaggtcgagtttg |
47662035 |
T |
|
| Q |
300 |
actccaccttttcacctcaagga |
322 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47662034 |
actccaccttttcacctcaagga |
47662012 |
T |
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