View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_27 (Length: 331)
Name: NF3064_low_27
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 42495867 - 42495632
Alignment:
| Q |
13 |
aaaatagtaaactgagggccaaaactaaagatgaagcgatcannnnnnnaggattgtatatatcttaaagaaatcaaagttgataacaactttgaatatc |
112 |
Q |
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| T |
42495867 |
aaaatagtaaactgagggccaaaactaaagatgaagcgatcgtttttttaggattgtatatatcttaaagaaatcaaagttgataacaactttgaatatc |
42495768 |
T |
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| Q |
113 |
atttccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagaccatggatggagttatgaaacttacagattgtagttaaacatggaacaga |
212 |
Q |
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| T |
42495767 |
atttccttaaaaaaa-aattgaatatcattgtatatgggcctgtttgagaccatagatggagttatgaaacttacagattgtagttaaacatggaacaga |
42495669 |
T |
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| Q |
213 |
accaagaattttgataccatatagatttattctttga |
249 |
Q |
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| T |
42495668 |
accaagaatcttgataccatatagatttattttttga |
42495632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 64 - 316
Target Start/End: Complemental strand, 42493629 - 42493361
Alignment:
| Q |
64 |
gattgtatatatcttaaagaaatcaaagttgataacaactttgaatatcatttccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagac |
163 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
42493629 |
gattgtttatatcctaaagaaatcaaagttgataacaactttcaatatcatttccttcaaaaaact-ttgaatatcattgtctatgggcatgtttgagac |
42493531 |
T |
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| Q |
164 |
catggatggagttatgaaacttacagattgtagttaaacatggaacagaaccaagaattttga-----------------taccatatagatttattctt |
246 |
Q |
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| T |
42493530 |
catagatggagttatgaaatttacagactgcaattaaacatggaatagaaccaagaacgttgacaccagataaagagcagtaccatttagatttattcat |
42493431 |
T |
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| Q |
247 |
tgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatggcagcaaagacaaacaaatt |
316 |
Q |
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| T |
42493430 |
cgacgtctccaagtaaaaagagcattattgacatcaagtagcctttgatgccagcaaagacaaacaaatt |
42493361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 42495628 - 42495536
Alignment:
| Q |
224 |
tgataccatatagatttattctttgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatggcagcaaagacaaacaaatt |
316 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42495628 |
tgataccatatagatttattcattggggtctccaagtaaaaagagcactattgacatcaagtagcctttgatggcagcaaagacagacaaatt |
42495536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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