View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_low_30 (Length: 309)

Name: NF3064_low_30
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_low_30
NF3064_low_30
[»] chr3 (4 HSPs)
chr3 (19-299)||(24976160-24976419)
chr3 (163-269)||(24930600-24930706)
chr3 (19-81)||(24930458-24930520)
chr3 (48-86)||(42028831-42028869)
[»] chr4 (1 HSPs)
chr4 (47-136)||(21261462-21261551)
[»] chr5 (2 HSPs)
chr5 (167-265)||(4943861-4943959)
chr5 (48-86)||(4944315-4944353)
[»] scaffold0777 (2 HSPs)
scaffold0777 (19-81)||(1412-1474)
scaffold0777 (164-232)||(1214-1282)
[»] chr2 (1 HSPs)
chr2 (48-86)||(28219569-28219607)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 24976419 - 24976160
Alignment:
Q  19 ctctatctatgtcaagagaagtgatggatgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagccaatctttatcattttcacatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24976419 ctctatctatgtcaagagaagtgatggatgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagccaatctttatcattt-------- 24976328  T
Q  119 aattcattattgcatcatatcataaatactagctccannnnnnncaggtgtaaatgtaacttctgctaccattgtggggaggaatggaagcttgggcatt 218  Q
                ||| |||| |||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24976327 ------------cataatattataa-tactagctccatttttttcaggtgtaaatgtaacttctgctaccattgtggggaggaatggaagcatgggcatt 24976241  T
Q  219 tatgcgagaagagaaaatattgatgattcccctattttagaggtaactcttcatacgttgaattagtttttactccctttg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24976240 tatgcgagaagagaaaatattgatgattcccctattttagaggtaactcttcacacgttgaattagtttttactccctttg 24976160  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 24930600 - 24930706
Alignment:
Q  163 caggtgtaaatgtaacttctgctaccattgtggggaggaatggaagcttgggcatttatgcgagaagagaaaatattgatgattcccctattttagaggt 262  Q
    |||||||||||| |||||||||||||  |||||| || ||||||||| ||||||||||||| | ||||||||| |||  ||||||| ||||||||| |||    
T  24930600 caggtgtaaatgcaacttctgctacctctgtgggaagaaatggaagcatgggcatttatgcaaaaagagaaaacatttttgattccactattttaggggt 24930699  T
Q  263 aactctt 269  Q
    |||||||    
T  24930700 aactctt 24930706  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 24930458 - 24930520
Alignment:
Q  19 ctctatctatgtcaagagaagtgatggatgtgaacacatgaaatgcaggtttattttgtattc 81  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  24930458 ctctatctatgtcaagagaagtagtggatgtgaacacatgaaatgcaggtttgttttgtattc 24930520  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 42028831 - 42028869
Alignment:
Q  48 gtgaacacatgaaatgcaggtttattttgtattcaacat 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42028831 gtgaacacatgaaatgcaggtttattttgtattcaacat 42028869  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 21261462 - 21261551
Alignment:
Q  47 tgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagccaatctttatcattttcacatgtaattcattattgcatcat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  21261462 tgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagctaatctttatcattttcgcatataattcattattgcatcat 21261551  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 4943959 - 4943861
Alignment:
Q  167 tgtaaatgtaacttctgctaccattgtggggaggaatggaagcttgggcatttatgcgagaagagaaaatattgatgattcccctattttagaggtaac 265  Q
    ||||||||||||||||||||||| |||||  || ||||||||| || |||||||||| |  ||||||||||||||||||||||||||||||||| ||||    
T  4943959 tgtaaatgtaacttctgctaccaatgtggaaagaaatggaagcatgagcatttatgcaaagagagaaaatattgatgattcccctattttagagctaac 4943861  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 4944353 - 4944315
Alignment:
Q  48 gtgaacacatgaaatgcaggtttattttgtattcaacat 86  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  4944353 gtgaacaaatgaaatgcaggtttattttgtattccacat 4944315  T

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Target: scaffold0777 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 1474 - 1412
Alignment:
Q  19 ctctatctatgtcaagagaagtgatggatgtgaacacatgaaatgcaggtttattttgtattc 81  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||    
T  1474 ctctatctatgtcaagagaaggagtggatgtgaacacatgaaatgcaggtttgttttgtattc 1412  T

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Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 1282 - 1214
Alignment:
Q  164 aggtgtaaatgtaacttctgctaccattgtggggaggaatggaagcttgggcatttatgcgagaagaga 232  Q
    ||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||||||| | ||||||    
T  1282 aggtgtaaatgcaacttctgctacctttgtgggaagaaatggaagcatgggcatttatgcaaaaagaga 1214  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 28219607 - 28219569
Alignment:
Q  48 gtgaacacatgaaatgcaggtttattttgtattcaacat 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28219607 gtgaacacatgaaatgcaggtttattttgtattcaacat 28219569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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