View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_32 (Length: 303)
Name: NF3064_low_32
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 23226895 - 23226599
Alignment:
| Q |
1 |
ccaatgcaatcctcaccactccagaagccatttctctaaccaaaacacttgttggtgttgctagctcaattaagaatgtagggctcaactttgagtcatc |
100 |
Q |
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| T |
23226895 |
ccaatgcaatcctcaccactccagaagccatttctctaaccaaaacacttgttggtgttgctagctcaattaagaatgtagggctcaactttgagtcatc |
23226796 |
T |
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| Q |
101 |
ttggaaagcaaaatggacatgtccacgacggtatccgaaaagggtgcccaccatacgtgtgccactagaactgtgaagtgaacggttctttgtgagaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23226795 |
ttggaaagcaaaatggacatgtccacgacggtatccgaaaagggtgcccaccatacgtgtgccactagaactgtgaagtgaacggttctttgtgagaatt |
23226696 |
T |
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| Q |
201 |
gttagtgctaacttgaactttgattttgaattcttcttcttttcaagagcagcaatttctaatggcatttggattcttaaatgcttatgatgatgtc |
297 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23226695 |
gttagtgctgacttgaactttgattttgaattcttcttcttttcaagagcagcaatttctaatggcatttggattcttaaatgattatgatgatgtc |
23226599 |
T |
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