View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_38 (Length: 282)
Name: NF3064_low_38
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 43139055 - 43139321
Alignment:
| Q |
1 |
ttcacctttctttgtcatttattctatcccgcttttgctagaaaacaacaacttcaccaggatgaccaaaaccagcaatgaaattagcttggtttcccat |
100 |
Q |
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| T |
43139055 |
ttcacctttctttgtcatttattctatcccacttttgctagaaaacaacaacttcaccaggatgaccaaaaccagcaatgaaattagtttggtttcccat |
43139154 |
T |
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| Q |
101 |
ttattccttcgatttattctatcccatttactccacttttgccatttattctatcccatttattcattcgatttcctccattggatattgaccaaaacca |
200 |
Q |
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| T |
43139155 |
ttattccttcgatttattctatcccatttactccacttttgtcatttattctatcccatttaatcattcgatttcctccatcggatattgaccaaaacca |
43139254 |
T |
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| Q |
201 |
gcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaaat |
267 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43139255 |
gcaatgaattcagtttagttttccatgaaacaatagccatctctactttgtctatcatcaccaaaat |
43139321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 9512348 - 9512085
Alignment:
| Q |
1 |
ttcacctttctttgtcatttattctatcccgcttttgctagaaaacaacaacttcaccaggatgaccaaaaccagcaatgaaattagcttggtttcccat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9512348 |
ttcacctttctttgtcatttattctatcccacttttgctagaaaacaacaacttcaccaggatgaccaaaaccagcaatgaaattagtttggtttcccat |
9512249 |
T |
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| Q |
101 |
ttattccttcgatttattctatcccatttactccacttttgccatttattctatcccatttattcattcgatttcctccattggatattgaccaaaacca |
200 |
Q |
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| T |
9512248 |
ttattccttcgatttattctatcccatttactccacttttgtcatttattctatcacatttattccttcgatttcctccggtggatattgacc-aaacca |
9512150 |
T |
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| Q |
201 |
gcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
265 |
Q |
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| T |
9512149 |
gcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
9512085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 47441784 - 47441951
Alignment:
| Q |
98 |
catttattccttcgatttattctatcccatttactccacttttgccatttattctatcccatttattcattcgatttcctccattggatattgaccaaaa |
197 |
Q |
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| T |
47441784 |
catttattcctttgatttattctatcccatttactccacttttgtcatttattctatcccatttattccttcgatttcctccattgaatattgaccaaaa |
47441883 |
T |
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| Q |
198 |
ccagcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
265 |
Q |
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| T |
47441884 |
ccagcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
47441951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 43243907 - 43243822
Alignment:
| Q |
180 |
attggatattgaccaaaaccagcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
265 |
Q |
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| T |
43243907 |
attgggtattgtccaaatccaccaatgaaatttgtttggtttcccataaaagagtaaccatctctattttgtctgtcatcaccaaa |
43243822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 25420303 - 25420207
Alignment:
| Q |
169 |
cgatttcctccattggatattgaccaaaaccagcaatgaattcagtttggtttcccatgaaacaatagccatctctactttgtctatcatcaccaaa |
265 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25420303 |
cgatttcctccattggatattgaccgaaaccagcaatgaaattagtttggtttcccatgaaacaataaccatctctactttgtctatcatcaccaaa |
25420207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 25420283 - 25420246
Alignment:
| Q |
63 |
tgaccaaaaccagcaatgaaattagcttggtttcccat |
100 |
Q |
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| T |
25420283 |
tgaccgaaaccagcaatgaaattagtttggtttcccat |
25420246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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