View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3064_low_42 (Length: 266)
Name: NF3064_low_42
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 1705709 - 1705947
Alignment:
| Q |
13 |
cagaatcggaaaacaaactaaacggtgtcgtatctaagaggaacatttgtaagaaagaaggtcattatttgcacacttggttttagagatcaaccagccc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1705709 |
cagaatcggaaaacaaactaaacggtgtcgtatctaagaggaacatttgtaagaaagaaggtcattatttgcacacttggttttagagatgaaccagccc |
1705808 |
T |
|
| Q |
113 |
atgagggtagaatttgagcatatgaatgcttggacaaacattggattcttgagcagtcgagatattatattggcatagaattgtgagagtgagacatgag |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1705809 |
ataagggtagaatttgagcatatgaatgattggacaaacattggattcttgagcagtcgagatattatattggcatagaattgtgagagtgagacatgaa |
1705908 |
T |
|
| Q |
213 |
tgaatttttcatccgcaaggatgataaaagtgaggttag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1705909 |
tgaatttttcatccgcaaggatgataaaagtgaggttag |
1705947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University