View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_5 (Length: 554)
Name: NF3064_low_5
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 32775877 - 32775364
Alignment:
| Q |
19 |
acttaaaaccatagtacaaggtaaaataattgtgaagcgtgtatacatgcctgagtaaacttctcaagataagggtaaatgtcaaagcgagaaacccatt |
118 |
Q |
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| T |
32775877 |
acttaaaaccatagtacaaggtaaaa-aatcgtg-----tgtatacatgcctgagtaaacctctcaagataagggtaaatgtcgaagcgagaaacccatt |
32775784 |
T |
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| Q |
119 |
ggcgcaaaattcctttctctgtatgaaaaggcacgcgtagaatgtgagagtgtttggtatcattgattggttcaaactcttggtggcacttggttcctct |
218 |
Q |
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|| |||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32775783 |
ggggcaagattcctttctctgtatgaaaaggtacacgtagaatatgagagtgtttggtatcattgattggttcaaactcctggtggcacttggttcctct |
32775684 |
T |
|
| Q |
219 |
agcatcaggtatcaaccttgttacctgtcaaagttaagagtatgctcacatgattttactaagttctaagttgcacgtagaaagaggtgatatgtttgca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32775683 |
agcatcaggtatcaaccttgttacctgtcaaagttaagagtatgctcacatgattttactaagttctaagttgcatgtagaaagaggtgatatgtttgca |
32775584 |
T |
|
| Q |
319 |
tgagactcaccacaagaatttgaggtttataatttagcccttgttgcttaattcttagaattaactcttcttccaaagccttgacttggtccaatatgta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775583 |
tgagactcaccacaagaatttgaggtttataatttagcccttgttgcttaattcttagaattaactcttcttccaaagccttgacttggtccaatatgta |
32775484 |
T |
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| Q |
419 |
aactacctgttgnnnnnnnggcaacaagtgttagaaaggaaaacaa-ttttgagccaaggtttttaagaaaaatctgcggctgagatttgggccgtgaaa |
517 |
Q |
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| T |
32775483 |
aactacctgttgtttttttggcaacaagtgttagaaaggaaaacaatttttgagccaagg--tttaagaaaaatctgcggctgagatttgggccgtgaca |
32775386 |
T |
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| Q |
518 |
tattggtttctgatgtctctgc |
539 |
Q |
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| T |
32775385 |
tattggtttctgatgtctctgc |
32775364 |
T |
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Back To:
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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 29119554 - 29119730
Alignment:
| Q |
68 |
cctgagtaaacttctcaagataagggtaaatgtcaaagcgagaaacccattggcgcaaaattcctttctctgtatgaaaaggcacgcgtagaatgtgaga |
167 |
Q |
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||||||||||| ||||||||||||| || ||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||| | || |
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| T |
29119554 |
cctgagtaaacctctcaagataaggatagatgtcaaagcgagaaacccattgacgcaggattcctttatccgtctgaaaaggcacgcgtagaattttcga |
29119653 |
T |
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| Q |
168 |
gtgtttggtatcattgattggttcaaactcttggtggcacttggttcctctagcatcaggtatcaaccttgttacct |
244 |
Q |
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| T |
29119654 |
gtgcttggtatcaatgattggttccaattcctgattgcatttggttccttgagcatcaggtatgagccttgtgacct |
29119730 |
T |
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