View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_low_50 (Length: 250)

Name: NF3064_low_50
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_low_50
NF3064_low_50
[»] chr1 (3 HSPs)
chr1 (1-195)||(9791015-9791209)
chr1 (190-240)||(9795803-9795853)
chr1 (43-185)||(49639597-49639739)
[»] chr6 (1 HSPs)
chr6 (41-227)||(26134852-26135038)
[»] scaffold0164 (1 HSPs)
scaffold0164 (43-185)||(25670-25812)
[»] scaffold0014 (1 HSPs)
scaffold0014 (41-227)||(94341-94527)
[»] chr8 (1 HSPs)
chr8 (43-185)||(15194542-15194684)
[»] chr4 (2 HSPs)
chr4 (41-227)||(13989390-13989576)
chr4 (71-179)||(18255415-18255523)
[»] chr3 (3 HSPs)
chr3 (41-227)||(31193687-31193873)
chr3 (41-227)||(52774440-52774626)
chr3 (43-185)||(53979560-53979702)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 9791015 - 9791209
Alignment:
Q  1 ttagaagccacgagtccagtatctttcagtaaatctaagaaatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaaga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9791015 ttagaagccatgagtccagtatctttcagtaaatctaagaaatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaaga 9791114  T
Q  101 aatatttaagtttcccaaggttcttaattttgaactcagcatccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  9791115 aatatttaagtttcccaaggttcttaattttgaactcagcatccaaaagagctttgattctaccaatctcagccatagagtttcctgctaaaatc 9791209  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 9795803 - 9795853
Alignment:
Q  190 aaaatcacatcatctacatagaccagaagagcagtgaaacttttgtctgtg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9795803 aaaatcacatcatctacatagaccagaagagcagtgaaacttttgtctgtg 9795853  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 49639597 - 49639739
Alignment:
Q  43 tattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagcat 142  Q
    ||||||||||||||  | || || |||  ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | |||||||||||||||| |||    
T  49639597 tattttctttgacatatgctgatgcctagtttggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacat 49639696  T
Q  143 ccaaaagagctttgattctatcaatctcagccatagagtttcc 185  Q
    | | |  ||||||||||||||| || |||| ||| || |||||    
T  49639697 caagagcagctttgattctatctatttcagtcatggaatttcc 49639739  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 26135038 - 26134852
Alignment:
Q  41 aatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagc 140  Q
    ||||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||| | ||||||||||||||  ||||| | ||| ||||| || || ||    
T  26135038 aatattttctttggcatatactaattccaagtttagaatgtgccacctctatgccaaggaaatatttaagttgaccaagatccttgattttaaattctgc 26134939  T
Q  141 atccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatcacatcatctacatagaccagaagagcagtgaa 227  Q
    ||| |    | | |||||| |||  |||||| |||| || || ||| ||||||| |||||||| ||||| || ||||||||||||||    
T  26134938 atcaagggtaaccttgattttattgatctcatccattgaattccctgctaaaatgacatcatccacatacacaagaagagcagtgaa 26134852  T

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Target: scaffold0164 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 25670 - 25812
Alignment:
Q  43 tattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagcat 142  Q
    ||||||||||||||  | || || |||  ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | |||||||||||||||| |||    
T  25670 tattttctttgacatatgctgatgcctagtttggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacat 25769  T
Q  143 ccaaaagagctttgattctatcaatctcagccatagagtttcc 185  Q
    | | |  ||||||||||||||| || |||| ||| || |||||    
T  25770 caagagcagctttgattctatctatttcagtcatggaatttcc 25812  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 94341 - 94527
Alignment:
Q  41 aatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagc 140  Q
    ||||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||| | ||||||||||||||  ||||| | ||| ||||| || || ||    
T  94341 aatattttctttggcatatactaattccaagtttagaatgtgccacctctatgccaaggaaatatttaagttgaccaagatccttgattttaaattctgc 94440  T
Q  141 atccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatcacatcatctacatagaccagaagagcagtgaa 227  Q
    ||| |    | | |||||| |||  |||||| |||| || || ||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  94441 atcaagggtaaccttgattttattgatctcatccattgaattccctgctaaaatgacatcatccacatacacaagaagggcagtgaa 94527  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 15194684 - 15194542
Alignment:
Q  43 tattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagcat 142  Q
    ||||||||||||||  | || || |||  ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | ||| |||||||||||| |||    
T  15194684 tattttctttgacatatgctgatgcctagtttggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttgattttgaactcaacat 15194585  T
Q  143 ccaaaagagctttgattctatcaatctcagccatagagtttcc 185  Q
    | | || ||||||||||||||| || |||| ||| || |||||    
T  15194584 caagaacagctttgattctatctatttcagtcatggaatttcc 15194542  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 13989576 - 13989390
Alignment:
Q  41 aatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagc 140  Q
    ||||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||| | ||||||||||||||  ||||| | ||| ||||| || || ||    
T  13989576 aatattttctttggcatatactaattccaagtttagaatgtgccacctctatgccaaggaaatatttaagttgaccaagatccttgattttaaattctgc 13989477  T
Q  141 atccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatcacatcatctacatagaccagaagagcagtgaa 227  Q
    ||| |    | | |||||| |||  |||||| |||| || || ||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  13989476 atcaagggtaaccttgattttattgatctcatccattgaattccctgctaaaatgacatcatccacatacacaagaagggcagtgaa 13989390  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 18255523 - 18255415
Alignment:
Q  71 ttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagcatccaaaagagctttgattctatcaatctc 170  Q
    |||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | ||||||||| |||||| |||| | |  ||||||||||||||| || ||    
T  18255523 ttttggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttaaactcaacatcaagagtagctttgattctatctatttc 18255424  T
Q  171 agccataga 179  Q
    || ||||||    
T  18255423 agtcataga 18255415  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 31193687 - 31193873
Alignment:
Q  41 aatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagc 140  Q
    ||||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||| | ||||||||||||||  ||||| | ||| ||||| || || ||    
T  31193687 aatattttctttggcatatactaattccaagtttagaatgtgccacctctatgccaaggaaatatttaagttgaccaagatccttgattttaaattctgc 31193786  T
Q  141 atccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatcacatcatctacatagaccagaagagcagtgaa 227  Q
    ||| |    | | |||||| |||  |||||| |||| || || ||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  31193787 atcaagggtaaccttgattttattgatctcatccattgaattccctgctaaaatgacatcatccacatacacaagaagggcagtgaa 31193873  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 52774626 - 52774440
Alignment:
Q  41 aatattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagc 140  Q
    ||||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||| | ||||||||||||||  ||||| | ||| ||||| || || ||    
T  52774626 aatattttctttggcatatactaattccaagtttagaatgtgccacctctatgccaaggaaatatttaagttgaccaagatccttgattttaaattctgc 52774527  T
Q  141 atccaaaagagctttgattctatcaatctcagccatagagtttcctcctaaaatcacatcatctacatagaccagaagagcagtgaa 227  Q
    ||| |    | | |||||| |||  |||||| |||| || || ||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  52774526 atcaagggtaaccttgattttattgatctcatccattgaattccctgctaaaatgacatcatccacatacacaagaagggcagtgaa 52774440  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 53979702 - 53979560
Alignment:
Q  43 tattttctttgacaagtactaatccctgttttagagtgtgccacctctatgcccaagaaatatttaagtttcccaaggttcttaattttgaactcagcat 142  Q
    ||||||||||||||  | || || |||  ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | |||||||||||||||| |||    
T  53979702 tattttctttgacatatgctgatgcctagtttggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacat 53979603  T
Q  143 ccaaaagagctttgattctatcaatctcagccatagagtttcc 185  Q
    | | |  ||||||||||||||| || |||| ||| || |||||    
T  53979602 caagagcagctttgattctatctatttcagtcatggaatttcc 53979560  T

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