View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3064_low_52 (Length: 240)

Name: NF3064_low_52
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3064_low_52
NF3064_low_52
[»] chr1 (1 HSPs)
chr1 (1-212)||(9790453-9790664)
[»] chr7 (1 HSPs)
chr7 (13-97)||(16258519-16258603)
[»] chr6 (1 HSPs)
chr6 (13-97)||(26135441-26135525)
[»] scaffold0014 (1 HSPs)
scaffold0014 (13-97)||(93917-94001)
[»] chr4 (1 HSPs)
chr4 (13-97)||(13989916-13990000)
[»] chr5 (1 HSPs)
chr5 (156-215)||(9281502-9281561)
[»] chr2 (1 HSPs)
chr2 (13-64)||(20040928-20040979)
[»] chr3 (3 HSPs)
chr3 (159-212)||(20605619-20605672)
chr3 (13-97)||(31193200-31193284)
chr3 (13-97)||(52775029-52775113)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9790664 - 9790453
Alignment:
Q  1 cttcactagtaccatggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaattgaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9790664 cttcactagtgccatggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgagcatagagcactatcttttgctagttgttaattgaa 9790565  T
Q  101 atggttactttacttgatgcaagacttaaatatcaaatgcactaaaccaccagtcctctattgtgacaatcaaagtgctatccatatttccggaaatcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||||||    
T  9790564 atggttactttacttgatgcaagacttaaatatcaaatgcactaaaccaccagtcccctattctgacaatcaaagtgctatccatattgctggaaatcct 9790465  T
Q  201 gtgtttcatgag 212  Q
    ||||||||||||    
T  9790464 gtgtttcatgag 9790453  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 16258519 - 16258603
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| |||||||| | ||| |||||||||||||| || ||||||||  |||||||||| || |||||||||||| ||||    
T  16258519 catggagagctaagaagcagcatacagtttccagaagttcatctgaagctgaatatagagcactttcctttgctagttgtgaatt 16258603  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 26135441 - 26135525
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| |||||||| | ||| |||||||||||||| || ||||||||  | |||||||| ||||||||||||||| ||||    
T  26135441 catggagagctaagaagcagcatacagtttccagaagttcatctgaagctgaatacagagcactttcttttgctagttgtgaatt 26135525  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 94001 - 93917
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| ||||| |||| ||| ||||| |||||||| || ||||||||  | |||||||| || |||||||||||| ||||    
T  94001 catggagagctaagaaacaacatacagtttctagaagttcatctgaagctgaatacagagcactttcctttgctagttgtgaatt 93917  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 13989916 - 13990000
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| ||||| |||| ||| ||||| |||||||| || ||||||||  | |||||||| || |||||||||||| ||||    
T  13989916 catggagagctaagaaacaacatacagtttctagaagttcatctgaagctgaatacagagcactttcctttgctagttgtgaatt 13990000  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 9281502 - 9281561
Alignment:
Q  156 ctctattgtgacaatcaaagtgctatccatatttccggaaatcctgtgtttcatgagagg 215  Q
    |||||||||||||||||||||||||| |||||| |    |||||||| ||||||||||||    
T  9281502 ctctattgtgacaatcaaagtgctatacatattgcttctaatcctgtttttcatgagagg 9281561  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 20040979 - 20040928
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctga 64  Q
    |||||||||||||||| ||||  ||||| |||||||||||||| ||||||||    
T  20040979 catggagagcaaagaaacaacacactgtctccagaagttcttctgaagctga 20040928  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 20605619 - 20605672
Alignment:
Q  159 tattgtgacaatcaaagtgctatccatatttccggaaatcctgtgtttcatgag 212  Q
    |||||||||||| |||||||| | |||||||| |  ||||||||||||||||||    
T  20605619 tattgtgacaattaaagtgctttgcatatttcagctaatcctgtgtttcatgag 20605672  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 31193284 - 31193200
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| ||||| || | ||| ||||| |||||||| || ||||||||  | |||||||| || |||||||||||| ||||    
T  31193284 catggagagctaagaaacagcatacagtttctagaagttcatctgaagctgaatacagagcactttcctttgctagttgtgaatt 31193200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 52775029 - 52775113
Alignment:
Q  13 catggagagcaaagaagcaacgtactgtttccagaagttcttcagaagctgaggatagagcactatcttttgctagttgttaatt 97  Q
    |||||||||| ||||| || | ||| ||||| |||||||| || ||||||||  | |||||||| || |||||||||||| ||||    
T  52775029 catggagagctaagaaacagcatacagtttctagaagttcatctgaagctgaatacagagcactttcctttgctagttgtgaatt 52775113  T

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