View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_6 (Length: 552)
Name: NF3064_low_6
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 42474465 - 42474975
Alignment:
| Q |
14 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttggacgtnnn |
113 |
Q |
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| T |
42474465 |
agatattatcccaccaagcagtgtcgtgacctggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgc---------gtaaa |
42474555 |
T |
|
| Q |
114 |
nnnnnttagcagagcaagttagcatttatataatcagttttgtgtagagcatttcttttatgtcattgaagctttagactacatacaagttagtccatga |
213 |
Q |
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| T |
42474556 |
aaaaattagcagagcaagtaagcatttatataatcagttttgtgtagagcatttcttt-atgtcattgaagctttagactacatacaagttattccatga |
42474654 |
T |
|
| Q |
214 |
tgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacggagc |
313 |
Q |
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| T |
42474655 |
tgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacggagc |
42474754 |
T |
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| Q |
314 |
tactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatgatg |
413 |
Q |
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| T |
42474755 |
tactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatgatg |
42474854 |
T |
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| Q |
414 |
catgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttagtatgtactgactactgagtacagttgaatgttc |
513 |
Q |
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| T |
42474855 |
catgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttagtatgtactggctactgagtacagttgaatgttc |
42474954 |
T |
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| Q |
514 |
atttctgacagagtacaactt |
534 |
Q |
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| T |
42474955 |
atttctgacagagtacaactt |
42474975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 482
Target Start/End: Original strand, 42467803 - 42468254
Alignment:
| Q |
14 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttggacgtnnn |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || |
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| T |
42467803 |
agatattatcccactaaacagtgtcttgacttg-tagaaccaaatgcttttgagaacttatg-attgaaccaccaaaagactttgctggctggatgtaaa |
42467900 |
T |
|
| Q |
114 |
nnnnnttagcagagcaagtta-gcatttatataatcagttttgtgtagagcatttcttttatgtcatt-gaagctttagactacatacaagttagtccat |
211 |
Q |
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| T |
42467901 |
aaaaattagcggagcaagtaaagcatttatataatcagttttgtgtaga-catttcttt---gtcatttgaagctttagactacatacaagttattccat |
42467996 |
T |
|
| Q |
212 |
gatgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacgga |
311 |
Q |
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| T |
42467997 |
gatacacttatagagcattt-------------cattttgtcattgaagctttcgagcattataggatatattcttttgtaggctgtaaacatttatgga |
42468083 |
T |
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| Q |
312 |
gctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatga |
411 |
Q |
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| T |
42468084 |
gctactggtctatgcttttcttgtgattttatttataaatgttcaattttttcatagattttcttagtcttttcttagctgcgtgcaaattattccatga |
42468183 |
T |
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| Q |
412 |
tgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacatgtgctttagta |
482 |
Q |
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| T |
42468184 |
tgcatgcaatcttattcttgttgagtc--atgcaaatcttaaggtttttccaatggttacatgtgctttagta |
42468254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 276 - 482
Target Start/End: Original strand, 42480200 - 42480414
Alignment:
| Q |
276 |
ggatacatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttca-----attttttcctagat |
370 |
Q |
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||||||||||||| |||||| |||||||||| ||||||| |||| |||||||||||||| |||| || |||||||||||| | ||||||||| || |
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| T |
42480200 |
ggatacatgctttattaggctataaacatttatggagctattggtttatgctttacttgttatttgatttatacatgttcaaatttaatttttcctaaat |
42480299 |
T |
|
| Q |
371 |
tttcttagtctt-ttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggtt |
467 |
Q |
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| T |
42480300 |
tttcctagtcttattgttagctacaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggtt |
42480399 |
T |
|
| Q |
468 |
acatgtgctttagta |
482 |
Q |
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|||||||| |||||| |
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| T |
42480400 |
acatgtgcattagta |
42480414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 42480000 - 42480093
Alignment:
| Q |
14 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttgga |
107 |
Q |
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||||||||||||| | | ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
42480000 |
agatattatcccagtgagcagtgtcgtgacaaggtagaaccaaatacttttgagaacttctggattgaaccaccaaaagactttactggctgga |
42480093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 531
Target Start/End: Original strand, 42480434 - 42480473
Alignment:
| Q |
492 |
tactgagtacagttgaatgttcatttctgacagagtacaa |
531 |
Q |
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| T |
42480434 |
tactgagtacagttgaatgtgcatttctgacagagtacaa |
42480473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 42480111 - 42480188
Alignment:
| Q |
119 |
ttagcagagcaagttagcatttatataatcagttttgtgtagagcatttcttttatgtcattgaagctttagactacata |
198 |
Q |
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| T |
42480111 |
ttagcggagcaagtaagcatttgca-aatcagttttgtgtagagcatttatttt-tggcatcgaagcttgagactacata |
42480188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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