View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_60 (Length: 227)
Name: NF3064_low_60
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_60 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (10 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39404579 - 39404353
Alignment:
| Q |
1 |
acttgttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactctattatctgtattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39404579 |
acttgttgtgttgaaatgatgagaaataatccttgtagtattgtgcatatatctatttgaaataagcatgctacttgttttactctattatctgtattct |
39404480 |
T |
|
| Q |
101 |
gttactttgatacagctgctggttgtgagtttgggctgagattctagtatatagtatacaactctacattttttagtgtagacttagaaaaaattagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39404479 |
gttactttgatacagctgctggttgtgagtttgggctgagattctagtatatagtatacaactctacattttttagtgtagacttagaaaaaattagtat |
39404380 |
T |
|
| Q |
201 |
tttctgatgtgaataaaaaatagtttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39404379 |
tttctgatgtgaataaaaaatagtttt |
39404353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 12068899 - 12068674
Alignment:
| Q |
5 |
gttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactctattatctgtattctgtta |
104 |
Q |
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|||| ||||||||||||||||||| ||| || | || ||||||||||||| ||| |||| |||| | |||||||||||||||||||| |||||| || |
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| T |
12068899 |
gttgagttgaaatgatgagaaatagtccgtgtaataatgtgcatatatctgtttcaaattagcaggttacttgttttactctattatatgtatttctttg |
12068800 |
T |
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| Q |
105 |
ctttgatacagctgctggttgtgagtttgggctgaga---ttctagtatatagtatacaactctacattttttagtgtagacttagaaaaaattagtatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
12068799 |
ctttgatacagctgctggttgtgagtttgggctgagatatttctagtatatagtatacaactctacattttttagtgtagacttacacaaaattagtatt |
12068700 |
T |
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| Q |
202 |
ttctgatgtgaataaaaaatagtttt |
227 |
Q |
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|||||| |||||||||||||||||| |
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| T |
12068699 |
ttctgacatgaataaaaaatagtttt |
12068674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 15972710 - 15972534
Alignment:
| Q |
51 |
atctatttgaaataagcatgctacttgttttactctattatctgtattctgttactttgatacagctgctggttgtgagtttgggctgagattctagtat |
150 |
Q |
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||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15972710 |
atctatttgaaattagcatgttacttgttttactctaatatctatattctgttgctttgatacaggtgctggttgtgagtttgggctgagattctagtat |
15972611 |
T |
|
| Q |
151 |
atagtatacaactctacattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |||||| ||||||| |||| |
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| T |
15972610 |
atagtatacaactctacattttttagtgtagacattgaaaaaattaatattttctgacgtgaatcaaaaatactttt |
15972534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12065057 - 12064839
Alignment:
| Q |
1 |
acttgttgtgttgaaatgatgagaaataatccttgcagtattgtgcatatatctatttgaaataagcatgctacttgttttactctattatctgtattct |
100 |
Q |
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|||||||| ||||||||||| ||| ||||||| | ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
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| T |
12065057 |
acttgttgagttgaaatgat---aaacaatcctt--aatattgtgcatatatctatttgaaattagaatgttacttgttttactctattatctgtattct |
12064963 |
T |
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| Q |
101 |
gttactttgatacagctgctggttgtgagtttgggctgagattctagtatatagtatacaactctacattttttagtgtagacttagaaaaaattagtat |
200 |
Q |
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||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||| |||||| |
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| T |
12064962 |
gttgctttgatactgctgctgcttgtgagtttggcctgagattctagtatatagtatacaactatacattttttagtgtcgact--gcaaaaa-tagtat |
12064866 |
T |
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| Q |
201 |
tttctgatgtgaataaaaaatagtttt |
227 |
Q |
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||||||| |||||| |||||||||||| |
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| T |
12064865 |
tttctgacgtgaattaaaaatagtttt |
12064839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 38816803 - 38816948
Alignment:
| Q |
74 |
cttgttttactctattatctgtattctgttactttgatacagctgctggttgtgagtttgggctgagattctagtatatagtatacaactctacattttt |
173 |
Q |
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|||||| || |||||| ||||||||||| | ||| ||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
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| T |
38816803 |
cttgttatattctattctctgtattctgctgcttagatacggctgctggttgtgagtttgggttcagattc-------tagtatacaactctacattttc |
38816895 |
T |
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| Q |
174 |
tagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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|| ||| ||| | || |||||||||||||| |||||||||| ||||| |||||| |
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| T |
38816896 |
taatgttgac-tggacaaaattagtattttttgatgtgaattaaaaacagtttt |
38816948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 15639192 - 15639255
Alignment:
| Q |
164 |
ctacattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
15639192 |
ctacattttttagtgtagacttagacaaaattagtattttctgacatgaatcaaaaatagtttt |
15639255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 15651198 - 15651261
Alignment:
| Q |
164 |
ctacattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
15651198 |
ctacattttttagtgtagacttagacaaaattagtattttctgacatgaatcaaaaatagtttt |
15651261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 15616019 - 15616081
Alignment:
| Q |
165 |
tacattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
15616019 |
tacattttttagtgtagacttagacaaaattagtattttctgacatgaatcaaaaatagtttt |
15616081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 15607674 - 15607737
Alignment:
| Q |
164 |
ctacattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||| |
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| T |
15607674 |
ctacattttttagtgtagacttagagaaaattagaattttctgacatgaatcaaaaatagtttt |
15607737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 15627433 - 15627494
Alignment:
| Q |
166 |
acattttttagtgtagacttagaaaaaattagtattttctgatgtgaataaaaaatagtttt |
227 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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|
| T |
15627433 |
acattttttagtgtagacttagtcaaaattagtattttctgacatgaatcaaaaatagtttt |
15627494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 39464865 - 39464907
Alignment:
| Q |
109 |
gatacagctgctggttgtgagtttgggctgagattctagtata |
151 |
Q |
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||||||||||||||||||| ||||| |||||| |||||||||| |
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| T |
39464865 |
gatacagctgctggttgtgggtttgtgctgaggttctagtata |
39464907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 12082180 - 12082288
Alignment:
| Q |
76 |
tgttttactctattatctgtattctgttactttgatacagctgctggttgtgagtttgggctgagattctagtatatagtatacaactctacatttttta |
175 |
Q |
| |
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||||||| |||||| |||||| |||||| ||| ||| ||| | |||||||| ||||||||||||||||||||||| | |||||||||| |||||| || |
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| T |
12082180 |
tgttttattctattctctgtagtctgtttcttatataaagccgttggttgtgggtttgggctgagattctagtataca--atacaactctccattttcta |
12082277 |
T |
|
| Q |
176 |
gtgtagactta |
186 |
Q |
| |
|
|||||||||| |
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|
| T |
12082278 |
atgtagactta |
12082288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 23636 - 23594
Alignment:
| Q |
109 |
gatacagctgctggttgtgagtttgggctgagattctagtata |
151 |
Q |
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||||||||||||||||||| ||||| |||||| |||||||||| |
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| T |
23636 |
gatacagctgctggttgtgggtttgtgctgaggttctagtata |
23594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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