View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3064_low_8 (Length: 508)
Name: NF3064_low_8
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 41 - 491
Target Start/End: Complemental strand, 7223333 - 7222891
Alignment:
| Q |
41 |
cactgcatattataagtcctcaaacaagaatccaaatatttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
140 |
Q |
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| T |
7223333 |
cactgcatattataaggcctcaaacaagaatccaaatacttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
7223234 |
T |
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| Q |
141 |
aggtactatgttagatgaagaagatactaaaaaacatcctagatcatagaggtatgtgaatcgagtttcacgcgccatagtttccattttgaaattagtt |
240 |
Q |
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| T |
7223233 |
aggtactatgttagatgaagaagatacta-aaaacatcctagatcatagaggtatgtgaatcgagtttcacgcg--atagtttccattttgaaattagtt |
7223137 |
T |
|
| Q |
241 |
gtatgacagggcaggttgatggnnnnnnngttattggacgattacacagcattggctgaccggagttcggattttatttnnnnnnnnnnnnnnnnnnnnn |
340 |
Q |
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| T |
7223136 |
gtatgacagggcaggttgatggtttttttgttattggacgattacaatgcattggctgaccggagttcggattttattt-aaaaaaataaaaataataat |
7223038 |
T |
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| Q |
341 |
tggtgttatagtaagtcaacttcatcaaacgtacagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagg |
440 |
Q |
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| T |
7223037 |
tggtgttatagcaagtcaacttcatcaa----acagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagg |
7222942 |
T |
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| Q |
441 |
gaaaacatggctaaattaaagttgtcagaatcgagacttaagtcctttagt |
491 |
Q |
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| T |
7222941 |
gaaaacatggctaaattaaagttgtcagaatcgagacttaagtcctttagt |
7222891 |
T |
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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 11432000 - 11432108
Alignment:
| Q |
373 |
acagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagggaaaacatggctaaattaaagttgtcagaatc |
472 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |
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| T |
11432000 |
acagtggtgttgtggaggacgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagggaaaacagggctaaattaaagttgccagagtc |
11432099 |
T |
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| Q |
473 |
gagacttaa |
481 |
Q |
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| T |
11432100 |
gagacttaa |
11432108 |
T |
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