View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065-Insertion-1 (Length: 836)

Name: NF3065-Insertion-1
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065-Insertion-1
NF3065-Insertion-1
[»] chr2 (6 HSPs)
chr2 (8-836)||(31850546-31851364)
chr2 (103-185)||(29231904-29231986)
chr2 (103-185)||(29345203-29345285)
chr2 (84-175)||(18115066-18115157)
chr2 (88-167)||(22311212-22311291)
chr2 (80-113)||(22108329-22108362)
[»] chr7 (11 HSPs)
chr7 (65-197)||(7681501-7681634)
chr7 (80-179)||(7666261-7666360)
chr7 (100-176)||(16427978-16428054)
chr7 (84-179)||(39227401-39227496)
chr7 (92-166)||(1675036-1675110)
chr7 (119-197)||(3316119-3316198)
chr7 (66-184)||(23655457-23655575)
chr7 (84-185)||(39199762-39199865)
chr7 (129-184)||(4122585-4122640)
chr7 (110-184)||(23662302-23662376)
chr7 (118-179)||(11739541-11739602)
[»] chr1 (7 HSPs)
chr1 (103-197)||(24882857-24882953)
chr1 (86-179)||(36754889-36754982)
chr1 (103-167)||(16635345-16635409)
chr1 (103-197)||(17048054-17048149)
chr1 (65-197)||(5223426-5223560)
chr1 (84-164)||(22669050-22669130)
chr1 (104-179)||(34497644-34497720)
[»] chr4 (4 HSPs)
chr4 (97-197)||(7221259-7221359)
chr4 (129-197)||(9597329-9597398)
chr4 (82-179)||(7224207-7224304)
chr4 (106-179)||(9736451-9736524)
[»] chr3 (4 HSPs)
chr3 (103-167)||(2906511-2906575)
chr3 (94-165)||(27757254-27757325)
chr3 (124-166)||(9828964-9829006)
chr3 (129-197)||(23528342-23528411)
[»] chr8 (8 HSPs)
chr8 (84-197)||(22881703-22881817)
chr8 (65-197)||(19342154-19342287)
chr8 (103-197)||(19371652-19371747)
chr8 (121-179)||(10252853-10252911)
chr8 (103-154)||(20707157-20707208)
chr8 (67-161)||(12843479-12843573)
chr8 (84-161)||(17872014-17872091)
chr8 (82-167)||(18917060-18917144)
[»] scaffold0003 (2 HSPs)
scaffold0003 (100-176)||(16691-16767)
scaffold0003 (100-176)||(30837-30913)
[»] chr6 (2 HSPs)
chr6 (115-160)||(19622700-19622745)
chr6 (124-165)||(10821501-10821542)
[»] chr5 (1 HSPs)
chr5 (103-167)||(24492080-24492144)
[»] scaffold0466 (1 HSPs)
scaffold0466 (82-151)||(4360-4429)


Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 836
Target Start/End: Complemental strand, 31851364 - 31850546
Alignment:
Q  8 agaattgctcttctcttgggtat-cagaatcgcaaagcgttaacttttatgacaaagggttgacttgggagtaagattttaattatatgatcatggacac 106  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  31851364 agaattgctcttctcttgggtattcagaatcacaaagcgttaacttttatgacaaagcattgacttgggagtaagattttaattatatgatcatgcacac 31851265  T
Q  107 ttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactc-tcttggttcaac-cttctaa 204  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  31851264 ttgaacaaactttagaatatctaattgttcttctatacactgttgtcaccaaaaccttagaaatattgttctacaactcatcttggttcaacacttctaa 31851165  T
Q  205 acagattaacaggtcatattggactttcgtaaggtcagactcatggctaaaaattaagcttatgatagggtacaagtcaaacttagaccttaaattttaa 304  Q
    |||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  31851164 acaggttaataggtcatattagactttcgtaaggtcagactcatgcctaaaaattaagcttatgatagactacaagtcaaacttagaccttaaattttaa 31851065  T
Q  305 acaaaccagatttaggtcttggaaaacctaacccgactcagcctatttttcactcataaccaaacatactcaaataattacacacagatgggagtaaatg 404  Q
    |||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31851064 acaaaccagacttaggtcttgcaaagcctaactcgactcagcctatttttcactcataaccaaacatactcaaataagtacacacagatgggagtaaatg 31850965  T
Q  405 tggtaaccctaagtttgaatccagtatctcatctcatataaaagggaaatcaaatttcagtataaaaaacgnnnnnnnnnnnnnnnnnncttcttctata 504  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||  ||||||                  |||||||||||    
T  31850964 tggtaa-cctaagtttgaatccaatatctcatctcatctaaaagggaaatcaaatttcaggat--aaaacg-ttttttgtttattttttcttcttctata 31850869  T
Q  505 tcttaacaattttatttgcaaatctatcatttgtactcaactaactgatttttctaaaataatcacataaaactatatcattttatccagaaaaatggac 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31850868 tcttaacaattttatttgcaaatctatcatttgtactcaactaactgatttttctaaaataatcacataaaactatatcattttatcaagaaaaatggac 31850769  T
Q  605 gaagagactccttactcattattatatattcatctataaggaagagtgtaactaactactcacgcaactaactactctcgacttaatgatgttgctaaaa 704  Q
     ||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  31850768 aaagagactcattactcattagtatatattcatctataagcaagagtgtaactaactactcacgcaactaactactcattacttaatgatgttgctaaaa 31850669  T
Q  705 agaggtattacatatgaaaggcaaataaaaagttacatgaatcatactattatttaccaaaagaattttgattactagacatcgtttctttctttttaat 804  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| |||    
T  31850668 agaggtattacatatgaa--gcaaataaaaagttacatgaatcatactatta-----caaaagaattttgattactagacatcgtttctttcttttaaat 31850576  T
Q  805 ttatgaaattcctccatttcatatatatttag 836  Q
    |||||||||| |||| ||||||||||||||||    
T  31850575 ttatgaaatt-ctcc-tttcatatatatttag 31850546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 29231986 - 29231904
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaata-ttgttctacaactc 185  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||    
T  29231986 acacttgaacaaagttta-agtacctaattgttcttctatacattgttatcatcaaaaccttagagatatttgttctaaaactc 29231904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 29345285 - 29345203
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaata-ttgttctacaactc 185  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||    
T  29345285 acacttgaacaaagttta-agtacctaattgttcttctatacattgttatcatcaaaaccttagagatatttgttctaaaactc 29345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 18115066 - 18115157
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgt 175  Q
    |||||||||||  ||||| |||||||| || || |||||||| | |||| ||||| ||||| ||||||||| |||||||||||||| |||||    
T  18115066 tttaattatatagtcatgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgt 18115157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 22311291 - 22311212
Alignment:
Q  88 attatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttaga 167  Q
    ||||||||||| || |||||||||||||  ||||  |||| ||||||||||| |||| ||||||||| ||||||||||||    
T  22311291 attatatgatcctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttaga 22311212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 22108362 - 22108329
Alignment:
Q  80 agattttaattatatgatcatggacacttgaaca 113  Q
    |||||||||||||||||||||| |||||||||||    
T  22108362 agattttaattatatgatcatgcacacttgaaca 22108329  T

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Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 7681634 - 7681501
Alignment:
Q  65 gttgacttgggagtaagattttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaacctt 164  Q
    ||||||||  ||| ||||||||||||||||| || |  | ||||||||||| ||| ||||| | | |||||||||||||||||||||||| |||||||||    
T  7681634 gttgacttctgagcaagattttaattatatggtcctacatacttgaacaaaattttgagtacccagttgttcttctatacattgttatcatcaaaacctt 7681535  T
Q  165 agaaatattgttctacaactc-tcttggttcaac 197  Q
    ||| ||||||||||| ||| | ||||||||||||    
T  7681534 agagatattgttctaaaacccatcttggttcaac 7681501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 7666360 - 7666261
Alignment:
Q  80 agattttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    |||||||||||||||| || |  | ||||||||||| ||| ||||| | | |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  7666360 agattttaattatatggtcctacatacttgaacaaaattttgagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttcta 7666261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 16427978 - 16428054
Alignment:
Q  100 tggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgtt 176  Q
    |||||||||||||||||||||||||| | ||||||| || ||||| ||||||||| ||||||| || | ||||||||    
T  16427978 tggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgtt 16428054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 39227496 - 39227401
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    |||||||||||| ||||| | ||||||||| ||||||||||||| |  |||||||  ||| |||||||||  |||||||||||||| ||| |||||    
T  39227496 tttaattatatggtcatgtatacttgaacacactttagagtatcaatctgttctttcatatattgttatcttcaaaaccttagaaacattattcta 39227401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 1675110 - 1675036
Alignment:
Q  92 tatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttag 166  Q
    ||||| |||| ||||||||||||||  |||| |||| ||||||||||||||||||| |||||| ||||| |||||    
T  1675110 tatgaacatgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttag 1675036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 3316119 - 3316198
Alignment:
Q  119 tagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactc-tcttggttcaac 197  Q
    ||||||| | ||||||||||||||||||| |||||| |||||| ||||| || |||||||| ||| | ||||||||||||    
T  3316119 tagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaaacccatcttggttcaac 3316198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 23655457 - 23655575
Alignment:
Q  66 ttgacttgggagtaagattttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaacctta 165  Q
    |||||||  |||| ||| |||||||||||| || |  ||||  ||||||||||||||||| | |||| ||||| ||||||| |||| || ||||||||||    
T  23655457 ttgacttcagagtcagaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaacctta 23655556  T
Q  166 gaaatattgttctacaact 184  Q
    || | ||| ||||| ||||    
T  23655557 gagacattattctaaaact 23655575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 39199865 - 39199762
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaa--actttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctaca 181  Q
    |||||||||||| ||||| | |||| ||||   || |||||||||| |||||||| |  |||||||||||| | |||||||||||| ||||| ||||| |    
T  39199865 tttaattatatggtcatgcatacttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaaccttagagatattattctaaa 39199766  T
Q  182 actc 185  Q
    ||||    
T  39199765 actc 39199762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 4122640 - 4122585
Alignment:
Q  129 aattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaact 184  Q
    |||||||||| | |||||||||||||  |||| |||||| ||||||||||||||||    
T  4122640 aattgttcttttctacattgttatcattaaaatcttagagatattgttctacaact 4122585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 23662302 - 23662376
Alignment:
Q  110 aacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaact 184  Q
    |||||| ||||| ||||| |||||||||| |||||||||| | || |||||||||||| | ||| ||||| ||||    
T  23662302 aacaaaatttagggtatccaattgttcttttatacattgtcagcatcaaaaccttagagacattattctaaaact 23662376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 11739602 - 11739541
Alignment:
Q  118 ttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    |||||||| ||||||||||||  |||  ||||||||| |||||| ||||||| |||||||||    
T  11739602 ttagagtacctaattgttctttcatatgttgttatcatcaaaacattagaaacattgttcta 11739541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 24882857 - 24882953
Alignment:
Q  103 acacttgaacaaactttaga-gtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactc-tcttggttcaac 197  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||| ||||| | || ||||||||||||||||||| ||||| ||||||||||||    
T  24882857 acacttgaacaaactttaaaagtatctaattattcttctatacattgctatcatctaagccttagaaatattgttctaaaactcatcttggttcaac 24882953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 36754982 - 36754889
Alignment:
Q  86 taattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    ||||| ||||||| || |||||||||||  | |||||||||| ||||||||||  |||||||||||||| |||||| ||||| |||||||||||    
T  36754982 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattgttatcatcaaaactttagagatattgttcta 36754889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 16635345 - 16635409
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttaga 167  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  16635345 acacatgaataaactttagagtatcaaattgttcttctatacattgttatcataaaaaccttaga 16635409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 17048149 - 17048054
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactctc-ttggttcaac 197  Q
    ||||||||||| || ||| | |||| ||||||| ||  ||||||| |||||| |||||||||||| ||||||||||| ||||| | ||||||||||    
T  17048149 acacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggttcaac 17048054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 5223560 - 5223426
Alignment:
Q  65 gttgacttgggagtaagattttaattatatgatcatggacacttgaacaaactttagagtatct-aattgttcttctatacattgttatcaccaaaacct 163  Q
    ||||||||  |||| | |||||||||||||| ||||  | |||| || |||||| | |||| |  |||||||||||||||||||||| ||| ||||| ||    
T  5223560 gttgactttagagtcatattttaattatatggtcatacatacttaaataaacttgatagtaccccaattgttcttctatacattgttttcatcaaaatct 5223461  T
Q  164 tagaaatattgttctacaactc-tcttggttcaac 197  Q
    |||||| ||| ||||| ||||| || |||||||||    
T  5223460 tagaaacattattctaaaactcatcctggttcaac 5223426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 22669130 - 22669050
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaacctt 164  Q
    |||||||||||| || || |||||||||||||  |||||||| | |||| |||||  ||||||||||||||  ||||||||    
T  22669130 tttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaaacctt 22669050  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 34497644 - 34497720
Alignment:
Q  104 cacttgaacaaactttagagtatctaattgttcttctatacattgttatca-ccaaaaccttagaaatattgttcta 179  Q
    |||||||||  ||||||||||  | |||| |||||||| |||||||||||| | ||||||||||| |||||||||||    
T  34497644 cacttgaacttactttagagtgcccaatttttcttctagacattgttatcatcaaaaaccttagagatattgttcta 34497720  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 7221259 - 7221359
Alignment:
Q  97 tcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactc-tcttggttca 195  Q
    ||||| ||||||||||||||||||||||||| ||||||| || |||| ||| |||||| |||||||||||||||||| || || ||| | ||||||||||    
T  7221259 tcatgcacacttgaacaaactttagagtatccaattgttattttata-atttttatcatcaaaaccttagaaatattattttaaaacccatcttggttca 7221357  T
Q  196 ac 197  Q
    ||    
T  7221358 ac 7221359  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 9597329 - 9597398
Alignment:
Q  129 aattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactc-tcttggttcaac 197  Q
    |||||||||||||||||||||||||| ||||| |||||| || |||||||| ||||| ||||||||||||    
T  9597329 aattgttcttctatacattgttatcatcaaaatcttagagatgttgttctaaaactcatcttggttcaac 9597398  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 7224207 - 7224304
Alignment:
Q  82 attttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    ||||||||| |||| |  || |||||| |||||| |||| || ||| |||| |||||||| |  ||||||| | |||||||||||| |||||||||||    
T  7224207 attttaattttatggtactgcacacttcaacaaattttaaagcatccaatttttcttctaaattttgttatgatcaaaaccttagagatattgttcta 7224304  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 9736451 - 9736524
Alignment:
Q  106 cttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    ||||||||||||||||  || ||||||||||||  ||||||| |||||| ||||||  |||| | |||||||||    
T  9736451 cttgaacaaactttaggctacctaattgttctttcatacatttttatcatcaaaactgtagagacattgttcta 9736524  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 2906511 - 2906575
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttaga 167  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||||| |||||    
T  2906511 acacttgaacaaattttagagtatccaattattcttctatacattgttatcatcaaaactttaga 2906575  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 27757254 - 27757325
Alignment:
Q  94 tgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaacctta 165  Q
    |||||||| ||  ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||    
T  27757254 tgatcatgcacctttgaacaaactttagagtatcgaattgctcttctatacattgttatcatcaaaatctta 27757325  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 9829006 - 9828964
Alignment:
Q  124 tatctaattgttcttctatacattgttatcaccaaaaccttag 166  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||    
T  9829006 tatctaattgttcttttatacattgttatcatcaaaactttag 9828964  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 23528411 - 23528342
Alignment:
Q  129 aattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactctc-ttggttcaac 197  Q
    ||||||||||  | |||||||||||| |||||||||||| | ||||||||| ||||| | ||||||||||    
T  23528411 aattgttctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttcaac 23528342  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 22881703 - 22881817
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaac 183  Q
    |||||||||||| ||||  ||||| ||||| || |||||||||| ||||||||||  ||| ||| |||||| |||||||||||| | ||||||||| |||    
T  22881703 tttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttctaaaac 22881802  T
Q  184 tctc-ttggttcaac 197  Q
    || | ||||||||||    
T  22881803 tcactttggttcaac 22881817  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 19342287 - 19342154
Alignment:
Q  65 gttgacttgggagtaagattttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaacctt 164  Q
    ||||||||  |||| ||| ||||||| |||| |  || ||||||||||| || || | ||||| ||||||||||  |||||||||||||| |||||| ||    
T  19342287 gttgacttcagagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaacttt 19342188  T
Q  165 agaaatattgttctacaactctc-ttggttcaac 197  Q
    ||| | ||||||||| ||||| | ||||||||||    
T  19342187 agagacattgttctaaaactcactttggttcaac 19342154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 19371747 - 19371652
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttctacaactctc-ttggttcaac 197  Q
    ||||||||||| || || | ||||| ||||||||||  |||||||||||||| |||||| ||||| | ||||||||| ||||| | ||||||||||    
T  19371747 acacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttcaac 19371652  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 10252853 - 10252911
Alignment:
Q  121 gagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgttcta 179  Q
    |||||||||||| ||||||||||||||||||| | |||||||||| | | |||||||||    
T  10252853 gagtatctaatttttcttctatacattgttataatcaaaaccttaaagacattgttcta 10252911  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 20707157 - 20707208
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatca 154  Q
    ||||||||||| || |||||||||||||||||||||  | ||||||||||||    
T  20707157 acacttgaacacacattagagtatctaattgttctttcaaacattgttatca 20707208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 12843479 - 12843573
Alignment:
Q  67 tgacttgggagtaagattttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaac 161  Q
    |||||| | ||| ||| |||||||||||| || || ||||||||||| || |||| ||||| |||| |||||  ||||||| |||||| ||||||    
T  12843479 tgactttgaagtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaac 12843573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 17872091 - 17872014
Alignment:
Q  84 tttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaac 161  Q
    ||||||| ||||||| || | ||||||||| |  ||||  |||| |||||||||| ||||||||||||||| ||||||    
T  17872091 tttaattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaac 17872014  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 18917060 - 18917144
Alignment:
Q  82 attttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttaga 167  Q
    ||||||||| |||| ||||  |||||||||||||| ||||| |    |||||||||||||||||||| ||||| ||||| ||||||    
T  18917060 attttaattctatggtcatccacacttgaacaaacattagaatgctcaattgttcttctatacattg-tatcatcaaaatcttaga 18917144  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 16691 - 16767
Alignment:
Q  100 tggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgtt 176  Q
    |||||||||||||||||||||||||| | ||||||| || ||||| ||||||||| ||||||| || | ||||||||    
T  16691 tggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgtt 16767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 30837 - 30913
Alignment:
Q  100 tggacacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttagaaatattgtt 176  Q
    |||||||||||||||||||||||||| | ||||||| || ||||| ||||||||| ||||||| || | ||||||||    
T  30837 tggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgtt 30913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 19622700 - 19622745
Alignment:
Q  115 actttagagtatctaattgttcttctatacattgttatcaccaaaa 160  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  19622700 actttagagtatccaattgttcttctatacattgttatcatcaaaa 19622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 10821501 - 10821542
Alignment:
Q  124 tatctaattgttcttctatacattgttatcaccaaaacctta 165  Q
    |||||||||||||||| |||| ||||||||| ||||||||||    
T  10821501 tatctaattgttcttcaatactttgttatcatcaaaacctta 10821542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 24492144 - 24492080
Alignment:
Q  103 acacttgaacaaactttagagtatctaattgttcttctatacattgttatcaccaaaaccttaga 167  Q
    |||||||||||||  ||||  |||| ||||||||||| |||| ||||||||| ||||||||||||    
T  24492144 acacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttaga 24492080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 4429 - 4360
Alignment:
Q  82 attttaattatatgatcatggacacttgaacaaactttagagtatctaattgttcttctatacattgtta 151  Q
    |||||||||||||| || || ||||| ||||| || |||||||||| ||||||| || ||||| ||||||    
T  4429 attttaattatatggtcctgcacactcgaacatacattagagtatccaattgttattttatactttgtta 4360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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