View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065-Insertion-10 (Length: 328)
Name: NF3065-Insertion-10
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 7352927 - 7353250
Alignment:
| Q |
7 |
atgatgtttgcagaaacatgaacatggatgaagatgatgccattagtggtcgttttgtgacgatggagaatcaagctggagggattggtggtaaagaaat |
106 |
Q |
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| T |
7352927 |
atgatgtttacagaaacatgaacatggatgaagatgatgccattagtggtcgttttgtgacgatggagaatcaagctggagggattggtggtaaagaaat |
7353026 |
T |
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| Q |
107 |
caaacttgaatcattaatggttgaagttactcttatgaagaagttggttcatgaaatgatgcataaacaagaaacacattttcaggtaaacttatattaa |
206 |
Q |
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| T |
7353027 |
caaacttgaatcattaatggttgaagtaactcttatgaagaagttggttcatgaaatgatgcataaacaagaaacacattttcaggtaaacttatattaa |
7353126 |
T |
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| Q |
207 |
tata--nnnnnnnnctggtaagattgtgattagaaaaacatatgtgtccaaagatatgtggtagtatttta-nnnnnnnatgttaaaagtatactatttt |
303 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |
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| T |
7353127 |
tatattttttttttctggtaaaattgtgattagaaaaacatatgtgtccaaagatatgtgggagtattttattttttttattttaaaagtatactatttt |
7353226 |
T |
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| Q |
304 |
tagtcagtatataccaactttgtt |
327 |
Q |
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||||||||||||| |||||||||| |
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| T |
7353227 |
tagtcagtatatatcaactttgtt |
7353250 |
T |
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