View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065-Insertion-12 (Length: 287)
Name: NF3065-Insertion-12
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 51405287 - 51405008
Alignment:
| Q |
8 |
aaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattac |
107 |
Q |
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| T |
51405287 |
aaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattac |
51405188 |
T |
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| Q |
108 |
agcaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacg |
207 |
Q |
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| T |
51405187 |
aacaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacaca |
51405088 |
T |
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| Q |
208 |
agctcattcattacatgaaatgaatgtcctaatgactccatcgttccatcgatacgctggtgtttatggaatggaaggag |
287 |
Q |
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| T |
51405087 |
agctcattcattacatgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggag |
51405008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 29981430 - 29981660
Alignment:
| Q |
27 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
126 |
Q |
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| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
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| Q |
127 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaa |
226 |
Q |
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| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
29981629 |
T |
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| Q |
227 |
atgaatgtcctaatgactccatcgttccatc |
257 |
Q |
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| T |
29981630 |
acgagtgccctaatgattccatagttccatc |
29981660 |
T |
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