View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065-Insertion-14 (Length: 106)
Name: NF3065-Insertion-14
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 2e-49; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 38082607 - 38082509
Alignment:
| Q |
7 |
aatttccttttctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaaccatatcatcattgcacctttggcacctt |
105 |
Q |
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| T |
38082607 |
aatttccttttctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaaccatatcatcattgcacctttggcacctt |
38082509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 38087026 - 38086943
Alignment:
| Q |
16 |
ttctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaaccatatcatcattgcacctttgg |
99 |
Q |
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| T |
38087026 |
ttctatgaggaaatggaatttcagactctgaaatagtatccattttgccaccatatggaaaccatatcatcattgcatctttgg |
38086943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 38059191 - 38059095
Alignment:
| Q |
7 |
aatttccttttctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaaccatatcatcattgcacctttggcacc |
103 |
Q |
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| T |
38059191 |
aatttccatgtctgtgtggaaatggaatttcagactctgaaatattatccattatgccaccataaggaaaacatatcaccatggcatctttggcacc |
38059095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 38061263 - 38061332
Alignment:
| Q |
7 |
aatttccttttctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaa |
76 |
Q |
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| T |
38061263 |
aatttccatatctatgtggaaatggaattttagactctgaaatattattcattatgccaccataaggaaa |
38061332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 38073515 - 38073455
Alignment:
| Q |
17 |
tctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaac |
77 |
Q |
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| T |
38073515 |
tctatgtggaaatggaatttcagattctgaaatcttatccattatgccaccataaggaaac |
38073455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 38078205 - 38078145
Alignment:
| Q |
17 |
tctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaac |
77 |
Q |
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| T |
38078205 |
tctatgtggaaatggaatttcaaattctgaaatattatccattatgccaccataaggaaac |
38078145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 37954848 - 37954795
Alignment:
| Q |
21 |
tgtggaaatggaatttcagactctgaaatagtatccattattccaccataagga |
74 |
Q |
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| T |
37954848 |
tgtgggaatggaatttcagactccgaaatctcgtccattattccaccataagga |
37954795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2153126 - 2153086
Alignment:
| Q |
9 |
tttccttttctatgtggaaatggaatttcagactctgaaat |
49 |
Q |
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| T |
2153126 |
tttccttttctatgtggaaaagggatttcagattctgaaat |
2153086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2176785 - 2176745
Alignment:
| Q |
9 |
tttccttttctatgtggaaatggaatttcagactctgaaat |
49 |
Q |
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| T |
2176785 |
tttccttttctatgtggaaaagggatttcagattctgaaat |
2176745 |
T |
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