View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065-Insertion-15 (Length: 151)

Name: NF3065-Insertion-15
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065-Insertion-15
NF3065-Insertion-15
[»] chr7 (4 HSPs)
chr7 (16-151)||(1971209-1971352)
chr7 (16-151)||(37362433-37362555)
chr7 (16-57)||(7841407-7841448)
chr7 (105-151)||(7841460-7841505)
[»] chr4 (15 HSPs)
chr4 (80-151)||(41810349-41810418)
chr4 (19-79)||(14209362-14209420)
chr4 (19-79)||(14210313-14210371)
chr4 (19-79)||(14211282-14211340)
chr4 (19-79)||(14212233-14212291)
chr4 (19-79)||(14214170-14214228)
chr4 (19-79)||(14215139-14215197)
chr4 (19-79)||(14216108-14216166)
chr4 (19-79)||(14217059-14217117)
chr4 (19-79)||(14218010-14218068)
chr4 (19-79)||(14219949-14220007)
chr4 (19-79)||(14220900-14220958)
chr4 (19-79)||(14221869-14221927)
chr4 (19-79)||(14222838-14222896)
chr4 (8-51)||(41810283-41810326)
[»] chr3 (9 HSPs)
chr3 (16-56)||(12812821-12812861)
chr3 (16-79)||(14459162-14459223)
chr3 (105-151)||(53689434-53689480)
chr3 (92-151)||(52130959-52131016)
chr3 (16-78)||(52311547-52311609)
chr3 (96-143)||(52311493-52311539)
chr3 (16-78)||(53689358-53689418)
chr3 (16-76)||(25489595-25489653)
chr3 (8-57)||(45458409-45458458)
[»] chr1 (4 HSPs)
chr1 (80-151)||(31770897-31770966)
chr1 (81-151)||(7607909-7607977)
chr1 (17-79)||(40981488-40981548)
chr1 (16-79)||(50290550-50290611)
[»] chr2 (1 HSPs)
chr2 (19-79)||(31409598-31409656)
[»] chr8 (1 HSPs)
chr8 (8-52)||(29729269-29729313)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 1971209 - 1971352
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaa----tgttactatctcacctctccattaat----- 106  Q
    |||||||||||||||||||  |||| ||||||||||||||||| ||||  || ||||||| ||||    |||||||||||||||||||||||| |         
T  1971209 atcagccgttgatcaaatc--actctttgaaaattgatacacgcgcatacagagaaacaacacaactgatgttactatctcacctctccattatttattt 1971306  T
Q  107 -ttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
     |||||||||||||||||||||| ||||||||||||||||||||||    
T  1971307 attgttcaataccaatgcaaactctacagagccccatgcttccctc 1971352  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 37362555 - 37362433
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaat 115  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||  ||||||||||||||       || |    | |||||||| |||||||||||    
T  37362555 atcagccgttgatcaaatctcactccttgaaaattgacacacgcgca--tagggaaacaaaac-------ctct---tcttctccatt-atttgttcaat 37362469  T
Q  116 accaatgcaaactgtacagagccccatgcttccctc 151  Q
    ||  ||||||||| ||||||||||||||||||||||    
T  37362468 actgatgcaaactctacagagccccatgcttccctc 37362433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 7841407 - 7841448
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacac 57  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7841407 atcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 7841460 - 7841505
Alignment:
Q  105 atttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||||    
T  7841460 atttgttcaatacca-tgcaaactctacagaaccccatgcttccctc 7841505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 41810349 - 41810418
Alignment:
Q  80 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  41810349 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 41810418  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14209420 - 14209362
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14209420 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14209362  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14210371 - 14210313
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14210371 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14210313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14211340 - 14211282
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14211340 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14211282  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14212291 - 14212233
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14212291 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14212233  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14214228 - 14214170
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14214228 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14214170  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14215197 - 14215139
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14215197 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14215139  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14216166 - 14216108
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14216166 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14216108  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14217117 - 14217059
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14217117 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14217059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14218068 - 14218010
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14218068 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14218010  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14220007 - 14219949
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220007 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14219949  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14220958 - 14220900
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220958 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14221927 - 14221869
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14221927 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14221869  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14222896 - 14222838
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14222896 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14222838  T

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Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 41810283 - 41810326
Alignment:
Q  8 gttaacatatcagccgttgatcaaatctcactcattgaaaattg 51  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||    
T  41810283 gttagcatatcaaccattgatcaaatctcactccttgaaaattg 41810326  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 12812861 - 12812821
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgataca 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12812861 atcagccgttgatcaaatctcactcattgaaaattgataca 12812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 14459223 - 14459162
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  14459223 atcagtcgttgatcaaatctcactccttgaaaattgatacacgagca--tagggaaacaaaaca 14459162  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 53689434 - 53689480
Alignment:
Q  105 atttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  53689434 atttgttcaataccgatgcaaactctacagagccccatgcttccctc 53689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 52130959 - 52131016
Alignment:
Q  92 cacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  52130959 cacctctccatta--ttgttcaataccgatgcaaactctacagtgccccatgcttccctc 52131016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 52311609 - 52311547
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaac 78  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| | |||| | ||||||||||||    
T  52311609 atcagtcgttgatcaaatctcactccttgaaaattgacacatgcgcatatggggaaacaaaac 52311547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 52311539 - 52311493
Alignment:
Q  96 tctccattaatttgttcaataccaatgcaaactgtacagagccccatg 143  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  52311539 tctccatta-tttgttcaataccgatgcaaactctacagagccccatg 52311493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 53689358 - 53689418
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaac 78  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||| |||  ||||||||||||||    
T  53689358 atcagccattgatcaaatctcactccttgaaaattaacacacgcgca--tagggaaacaaaac 53689418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 25489595 - 25489653
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaa 76  Q
    |||||||||| |||||||||||||  || |||||||| |||||||||  ||||||||||||    
T  25489595 atcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgca--tagggaaacaaa 25489653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 45458458 - 45458409
Alignment:
Q  8 gttaacatatcagccgttgatcaaatctcactcattgaaaattgatacac 57  Q
    ||||||| || |||| ||||||||||||||||| ||||||||||| ||||    
T  45458458 gttaacacatgagcccttgatcaaatctcactccttgaaaattgaaacac 45458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 31770966 - 31770897
Alignment:
Q  80 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  31770966 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 31770897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 7607977 - 7607909
Alignment:
Q  81 tgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctc 151  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  7607977 tgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 7607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 40981548 - 40981488
Alignment:
Q  17 tcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||||||||||||||| ||||||| || |||||||||||||| |||  ||||||||| |||||    
T  40981548 tcagccgttgatcaaaactcactctttaaaaattgatacacgcgca--tagggaaaccaaaca 40981488  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 50290550 - 50290611
Alignment:
Q  16 atcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |||  ||  |||||||||||||||    
T  50290550 atcagtcgttgataaaatctcactccttgaaaattgatagacgctca--tagggaaacaaaaca 50290611  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 31409656 - 31409598
Alignment:
Q  19 agccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 79  Q
    |||| |||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  31409656 agccattgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 31409598  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 29729313 - 29729269
Alignment:
Q  8 gttaacatatcagccgttgatcaaatctcactcattgaaaattga 52  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||||    
T  29729313 gttaacacatcaaccgttgatcaaatctcactccatgaaaattga 29729269  T

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