View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065-Insertion-4 (Length: 518)

Name: NF3065-Insertion-4
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065-Insertion-4
NF3065-Insertion-4
[»] chr8 (9 HSPs)
chr8 (355-518)||(15214984-15215147)
chr8 (336-513)||(15066277-15066454)
chr8 (336-500)||(15076230-15076394)
chr8 (336-492)||(15052072-15052228)
chr8 (241-315)||(44842337-44842411)
chr8 (441-518)||(13033051-13033128)
chr8 (269-315)||(13439250-13439296)
chr8 (188-243)||(44842154-44842212)
chr8 (137-169)||(43983367-43983399)
[»] chr7 (8 HSPs)
chr7 (241-315)||(46371998-46372072)
chr7 (264-315)||(29054084-29054135)
chr7 (188-242)||(46371815-46371872)
chr7 (12-61)||(37790217-37790266)
chr7 (75-124)||(37790246-37790295)
chr7 (195-243)||(46741658-46741709)
chr7 (188-219)||(7671226-7671257)
chr7 (188-218)||(29054003-29054033)
[»] chr5 (8 HSPs)
chr5 (241-315)||(2852329-2852403)
chr5 (241-315)||(2842241-2842315)
chr5 (259-316)||(20406728-20406785)
chr5 (264-315)||(34986218-34986269)
chr5 (188-243)||(34986305-34986363)
chr5 (188-243)||(42866773-42866828)
chr5 (188-243)||(2842086-2842144)
chr5 (193-243)||(2852179-2852232)
[»] chr3 (12 HSPs)
chr3 (241-315)||(21626989-21627063)
chr3 (241-315)||(42374032-42374106)
chr3 (264-315)||(4330468-4330519)
chr3 (264-315)||(16860464-16860515)
chr3 (264-315)||(21336254-21336305)
chr3 (188-243)||(36099733-36099791)
chr3 (188-243)||(21627188-21627246)
chr3 (188-243)||(4330555-4330612)
chr3 (188-243)||(16860551-16860609)
chr3 (188-227)||(42373846-42373885)
chr3 (135-171)||(11510416-11510452)
chr3 (142-172)||(11511157-11511187)
[»] chr1 (15 HSPs)
chr1 (241-315)||(7699095-7699169)
chr1 (241-315)||(7733393-7733467)
chr1 (264-315)||(4296144-4296195)
chr1 (264-315)||(11166107-11166158)
chr1 (264-315)||(41768901-41768952)
chr1 (264-315)||(50986671-50986722)
chr1 (264-315)||(35567640-35567691)
chr1 (188-243)||(33205225-33205283)
chr1 (188-239)||(4296052-4296106)
chr1 (188-239)||(7699270-7699324)
chr1 (188-227)||(35567752-35567791)
chr1 (188-227)||(37382984-37383023)
chr1 (188-227)||(41769010-41769049)
chr1 (281-315)||(37382877-37382911)
chr1 (188-243)||(46321075-46321136)
[»] chr4 (8 HSPs)
chr4 (241-315)||(14200082-14200156)
chr4 (264-315)||(37080305-37080356)
chr4 (188-243)||(37080392-37080450)
chr4 (188-243)||(1375908-1375966)
chr4 (188-227)||(14200306-14200345)
chr4 (264-311)||(36039911-36039958)
chr4 (188-243)||(36039817-36039875)
chr4 (188-227)||(39455589-39455628)
[»] chr6 (2 HSPs)
chr6 (264-315)||(25461254-25461305)
chr6 (188-221)||(25461390-25461423)
[»] chr2 (4 HSPs)
chr2 (264-315)||(13099341-13099392)
chr2 (188-243)||(345164-345222)
chr2 (188-227)||(13099448-13099487)
chr2 (199-243)||(29601386-29601433)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 355 - 518
Target Start/End: Complemental strand, 15215147 - 15214984
Alignment:
Q  355 ttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagcc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15215147 ttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagcc 15215048  T
Q  455 atgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgta 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15215047 atgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgta 15214984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 336 - 513
Target Start/End: Original strand, 15066277 - 15066454
Alignment:
Q  336 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15066277 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaattagc 15066376  T
Q  436 aaagtaaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatat 513  Q
     ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  15066377 gaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatggatgtgatactcaatat 15066454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 336 - 500
Target Start/End: Original strand, 15076230 - 15076394
Alignment:
Q  336 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15076230 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaattagc 15076329  T
Q  436 aaagtaaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaaaatgggtg 500  Q
     ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15076330 gaagaaaacaaggtaatccatgattataataacctaatcttgtcacttcctaaagaaaatgggtg 15076394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 336 - 492
Target Start/End: Original strand, 15052072 - 15052228
Alignment:
Q  336 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||    
T  15052072 acgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaaaaattagc 15052171  T
Q  436 aaagtaaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaa 492  Q
     ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  15052172 gaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaa 15052228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 44842337 - 44842411
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44842337 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 44842411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 13033051 - 13033128
Alignment:
Q  441 aaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgta 518  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13033051 aaacaaggtaatccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgta 13033128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 13439296 - 13439250
Alignment:
Q  269 aatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13439296 aatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 13439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 44842154 - 44842212
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  44842154 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtct 44842212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 43983367 - 43983399
Alignment:
Q  137 acttcgttcttgctttcctctagtttattccca 169  Q
    |||| ||||||||||||||||||||||||||||    
T  43983367 actttgttcttgctttcctctagtttattccca 43983399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 46371998 - 46372072
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46371998 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 46372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 29054084 - 29054135
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054084 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 29054135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 46371815 - 46371872
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtc 242  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  46371815 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtc 46371872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 37790217 - 37790266
Alignment:
Q  12 ttacaggcaagttgcaccacattatcttcataaattgagagtgtggtttg 61  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  37790217 ttacacgcaagttgcactacattatcttcataaattgagagtgtggtttg 37790266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 37790246 - 37790295
Alignment:
Q  75 ataaattgagagtgtggtttgttcaaaaaaggaaataaattgagagatgt 124  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  37790246 ataaattgagagtgtggtttgctcaaaaaaagaaataaattgagagatgt 37790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 46741658 - 46741709
Alignment:
Q  195 ctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  46741658 ctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtct 46741709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 7671226 - 7671257
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccg 219  Q
    ||||||||||||||||||||||||||||||||    
T  7671226 aaactctctcattctcaaacaaaccctagccg 7671257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 29054003 - 29054033
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagcc 218  Q
    |||||||||||||||||||||||||||||||    
T  29054003 aaactctctcattctcaaacaaaccctagcc 29054033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 2852329 - 2852403
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2852329 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 2852403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 2842241 - 2842315
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2842241 tcttgacatccccgtacaagcttttgaaaatccataaccataaaaagagtcccctccatcttctctacaaaaccc 2842315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 20406728 - 20406785
Alignment:
Q  259 agctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaacccc 316  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20406728 agcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaacccc 20406785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 34986269 - 34986218
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986269 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 34986218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 34986363 - 34986305
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  34986363 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtct 34986305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 42866773 - 42866828
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctccctccttcagtgtgtct 243  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  42866773 aaactctctcattctctaacaaaccctagctgccgcctccgtccttcagtgtgtct 42866828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 2842086 - 2842144
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  2842086 aaactctctcattctcaaataaaccctagccgccgcctcctccctccttcagtgtgtct 2842144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 2852179 - 2852232
Alignment:
Q  193 ctctcattctcaaacaaacccta---gccgccgcctccctccttcagtgtgtct 243  Q
    |||||||||||||||||||||||   ||||||||| ||||||||||||||||||    
T  2852179 ctctcattctcaaacaaaccctagccgccgccgccaccctccttcagtgtgtct 2852232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 21627063 - 21626989
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21627063 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 21626989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 42374032 - 42374106
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42374032 tcttgacatccacgtacaagcttttgaaaatctatcaccataaaaagagtcccctccatcttctctacaaaaccc 42374106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 4330519 - 4330468
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4330519 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 4330468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 16860515 - 16860464
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16860515 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 16860464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 21336305 - 21336254
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21336305 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 21336254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 36099733 - 36099791
Alignment:
Q  188 aaactctctcattctcaaacaaacccta---gccgccgcctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  36099733 aaactctctcattctcaaacaaaccctagccgccgccgcctccctccttcagtgtgtct 36099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 21627246 - 21627188
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgtgtct 243  Q
    ||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  21627246 aaactctctgattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtct 21627188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 4330612 - 4330555
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||    
T  4330612 aaactctctcattctcaaacaaa-cctagccgccgcctcctccctccttcagtgtgtct 4330555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 16860609 - 16860551
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||  ||||||||   ||||||||||||||||||||    
T  16860609 aaactctctcattctcaaacaaacccccgccgccgcctcctccctccttcagtgtgtct 16860551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 42373846 - 42373885
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  42373846 aaactctctcattctcgaacaaaccctagccgccgcctcc 42373885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 11510452 - 11510416
Alignment:
Q  135 gtacttcgttcttgctttcctctagtttattcccacc 171  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11510452 gtactttgttcttgctttcctctagtttattcccacc 11510416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 11511157 - 11511187
Alignment:
Q  142 gttcttgctttcctctagtttattcccacct 172  Q
    |||||||||||||||||||||||||||||||    
T  11511157 gttcttgctttcctctagtttattcccacct 11511187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 7699169 - 7699095
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7699169 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 7699095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 7733393 - 7733467
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7733393 tcttgacatccacgtacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 7733467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 4296144 - 4296195
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4296144 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 4296195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 11166107 - 11166158
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166107 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 11166158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 41768952 - 41768901
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768952 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 41768901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 50986722 - 50986671
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50986722 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 50986671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 35567691 - 35567640
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35567691 ttgaaaatccatcaccgtaaaaagagtcccctccatcttctctacaaaaccc 35567640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 33205283 - 33205225
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  33205283 aaactctctcattctcaaacaaaccctagccgccgactcctccctccttcagtgtgtct 33205225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 4296052 - 4296106
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgt 239  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  4296052 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgt 4296106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 7699324 - 7699270
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgt 239  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  7699324 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgt 7699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 35567791 - 35567752
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35567791 aaactctctcattctcaaacaaaccctagccgccgcctcc 35567752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 37383023 - 37382984
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37383023 aaactctctcattctcaaacaaaccctagccgccgcctcc 37382984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 41769049 - 41769010
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41769049 aaactctctcattctcaaacaaaccctagccgccgcctcc 41769010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 37382911 - 37382877
Alignment:
Q  281 taaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||||||||||||||||||||||||    
T  37382911 taaaaagagtcccctccatcttctctacaaaaccc 37382877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 46321075 - 46321136
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg------cctccctccttcagtgtgtct 243  Q
    |||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||    
T  46321075 aaactctctcattctcaaacaagccctagccgccgccgcctcctccctccttcagtgtgtct 46321136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 14200156 - 14200082
Alignment:
Q  241 tcttgacatccacgtacaagctcttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14200156 tcttgacatccacgcacaagcttttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 14200082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 37080356 - 37080305
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37080356 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 37080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 37080450 - 37080392
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  37080450 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtct 37080392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 1375966 - 1375908
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgc---ctccctccttcagtgtgtct 243  Q
    ||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||    
T  1375966 aaactctctcattctcaaacaaaccctagccgccgcctcctccctccctcagtgtgtct 1375908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 14200345 - 14200306
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14200345 aaactctctcattctcaaacaaaccctagccgccgcctcc 14200306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 36039911 - 36039958
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaa 311  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  36039911 ttgaaaacccatcaccataaaatgagtcccctccatcttctctacaaa 36039958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 36039817 - 36039875
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    ||||||||||||||| |||||||||||||||||||   |||||||| ||||||||||||    
T  36039817 aaactctctcattcttaaacaaaccctagccgccgcctcctccctcattcagtgtgtct 36039875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 39455589 - 39455628
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  39455589 aaactctctcattctcaaacaaaccctagccgacgcctcc 39455628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 25461305 - 25461254
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25461305 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 25461254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 25461423 - 25461390
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgcc 221  Q
    ||||||||||||||||||||||||||||||||||    
T  25461423 aaactctctcattctcaaacaaaccctagccgcc 25461390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 13099392 - 13099341
Alignment:
Q  264 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13099392 ttgaaaatccatcaccataaaaagagtcccctccatcttctctacaaaaccc 13099341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 345222 - 345164
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagcc---gccgcctccctccttcagtgtgtct 243  Q
    |||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  345222 aaactctctcattctcaaacaaaccctagccgcagcctcctccctccttcagtgtgtct 345164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 13099487 - 13099448
Alignment:
Q  188 aaactctctcattctcaaacaaaccctagccgccgcctcc 227  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  13099487 aaactctctcattctcaaacaaaccctagccgtcgcctcc 13099448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 29601386 - 29601433
Alignment:
Q  199 ttctcaaacaaaccctagccgccg---cctccctccttcagtgtgtct 243  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||||    
T  29601386 ttctcaaacaaacccaagccgccgcctcctccctccttcagtgtgtct 29601433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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