View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065-Insertion-5 (Length: 481)
Name: NF3065-Insertion-5
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 41873326 - 41872852
Alignment:
| Q |
7 |
atatagaaccatataaaatcatccaaacaaaacaatcaaaattatatattnnnnnnnntgtcactaggttatcagcaaaaatgtcatcacaaagaacgct |
106 |
Q |
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| T |
41873326 |
atatagaaccatataaaatcatccaaacaaaacaataaaaattatatattaaaaaaaatgtcactaggttatcagcaaaaatgtcatcacaaagaacgct |
41873227 |
T |
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| Q |
107 |
atagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttcttcctcaacatttcatcttcaatatcatcaacattaaacaaca |
206 |
Q |
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| T |
41873226 |
atagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttcttcctcaacatttcatcttcaatatcatcaacattaaacaaca |
41873127 |
T |
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| Q |
207 |
acgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaacaagtttcttaaaccg |
306 |
Q |
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| T |
41873126 |
acgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccagcaagtttcttaaaccg |
41873027 |
T |
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| Q |
307 |
atacctctttgttccatataagaacacacaaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacatgatcttgaatgtaa |
406 |
Q |
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| T |
41873026 |
atacctctttgttccatataagaacacacaaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacatgatcttgaatgtaa |
41872927 |
T |
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| Q |
407 |
acaagaattgtcactgctgttaatgaacctatgcttatgaaaaagaagaaccagttgaagaatttaaccatgtga |
481 |
Q |
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| T |
41872926 |
acaagaattgtcactgctgttaatgaacctatgcttatgaaaaagaagaaccagttgaagaatttaaccatgtga |
41872852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 411
Target Start/End: Original strand, 3645957 - 3646133
Alignment:
| Q |
235 |
cctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaacaagtttcttaaaccgatacctctttgttccatataagaacaca |
334 |
Q |
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| T |
3645957 |
cctcttcctccaagcggccacaaacactaccgcaatctgagtcaagggactacctaccggtttcttgtaccgatacttacaggttccaaacaaaaacaca |
3646056 |
T |
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| Q |
335 |
caaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacatgatcttgaatgtaaacaag |
411 |
Q |
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| T |
3646057 |
acaagtgctagcacaatagaacaagcacatataccataaccccaatctctaccctgatgatcttgtatgtaaacaag |
3646133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 3658391 - 3658451
Alignment:
| Q |
236 |
ctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaacaagtt |
296 |
Q |
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| T |
3658391 |
ctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagtt |
3658451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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