View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-10 (Length: 315)
Name: NF3065R-Insertion-10
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 38996857 - 38996552
Alignment:
| Q |
8 |
aatatttactcattcattcggattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcgnnnnnnnnnaagaatttcagaaaaaatg |
107 |
Q |
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| T |
38996857 |
aatatttactcattcgttcggattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcgttttttt--aagaatttcagaaaaaatg |
38996760 |
T |
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| Q |
108 |
tacaaagaaatcgaaaaagaggtatagtatttacccgattcaatccaagtcatcggttcatacctgttcaatagcattgccagtccattaggtcgctcca |
207 |
Q |
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| T |
38996759 |
tacaaagaaatcgaaaaagaggtatagtatttacccgattcaatccaagtcatcggttcatacccgttcaatagcattgccagtccattaggtcgctcca |
38996660 |
T |
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| Q |
208 |
cccaattttcggccgtccaatccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagaga |
307 |
Q |
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| T |
38996659 |
cccaattttcggccgtccaatccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagaga |
38996560 |
T |
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| Q |
308 |
tacttacg |
315 |
Q |
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| T |
38996559 |
tacttacg |
38996552 |
T |
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