View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-14 (Length: 493)
Name: NF3065R-Insertion-14
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-14 |
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| [»] scaffold0572 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 35805969 - 35806304
Alignment:
| Q |
30 |
aaatggattatgacggagttttggttgtggtgttgatgatgaggagcttgtgggtgannnnnnnnnnnnnnnncttcccgttttttgctcatgatgacct |
129 |
Q |
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| T |
35805969 |
aaatggactatgacggagttttggttgtggtgttgatgatgaggagtttgcgggtgatttttgttttttt---cttcctattttttgctcatgatgacct |
35806065 |
T |
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| Q |
130 |
catatttgggtccatcacagccgctgcttactcgcgtcggtttaaggttgtcttcgctttggctcgtggcttcgttttagtgattcaattttgggttgtt |
229 |
Q |
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| T |
35806066 |
catatttgggttcatctcagccgctgcttactcgcgtcggtttaaggttgtcttcgttttggctcgtggcttcattttagtgattcaattttgggttgtt |
35806165 |
T |
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| Q |
230 |
ttcgagctggttttgtttccgctaccattccacttgtcttatagatttattttctgaagtctggtgacccgatcgcttttatttcaacattagaagtcgg |
329 |
Q |
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| T |
35806166 |
ttcgagctggttttgtttgcgctaccattccacttgtcttatagatttattttctgaagtctggtgacccgatcgcttttgtttcaacatcataagtcgg |
35806265 |
T |
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| Q |
330 |
tgttcagttttcaagtttttcggtaggttaaggtgactt |
368 |
Q |
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| T |
35806266 |
tgtccagttttcaagtttttcggtaggttaaggtgactt |
35806304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 395 - 487
Target Start/End: Original strand, 35806308 - 35806400
Alignment:
| Q |
395 |
gacatagtgatttgtttctagagtttgatgggccggtcgcttttggtttaagattgagagtcaatttctttacacaagttttaggtcttgtta |
487 |
Q |
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| T |
35806308 |
gacatagtgatttttttctagagtttggtgggccggtcgcttttggtttaagattgagagtcaatttctttacacaagttttaggtcttgtta |
35806400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 463
Target Start/End: Original strand, 23144151 - 23144213
Alignment:
| Q |
401 |
gtgatttgtttctagagtttgatgggccggtcgcttttggtttaagattgagagtcaatttct |
463 |
Q |
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| T |
23144151 |
gtgatttgtttctagagtttggttggacgatctcatttggttcgagattgagagtcaatttct |
23144213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 34105407 - 34105472
Alignment:
| Q |
399 |
tagtgatttgtttctagagtttgatgggccggtcgcttttggtttaagattgagagtcaatttctt |
464 |
Q |
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| T |
34105407 |
tagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttctt |
34105472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 20970509 - 20970473
Alignment:
| Q |
382 |
ggagttgaggggggacatagtgatttgtttctagagt |
418 |
Q |
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| T |
20970509 |
ggagttgaggggtgacttagtgatttgtttctagagt |
20970473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 6359 - 6323
Alignment:
| Q |
382 |
ggagttgaggggggacatagtgatttgtttctagagt |
418 |
Q |
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| T |
6359 |
ggagttgaggggtgacttagtgatttgtttctagagt |
6323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 31233 - 31269
Alignment:
| Q |
382 |
ggagttgaggggggacatagtgatttgtttctagagt |
418 |
Q |
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| T |
31233 |
ggagttgaggggtgacttagtgatttgtttctagagt |
31269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 41403102 - 41403066
Alignment:
| Q |
382 |
ggagttgaggggggacatagtgatttgtttctagagt |
418 |
Q |
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| T |
41403102 |
ggagttgaggggtgacttagtgatttgtttctagagt |
41403066 |
T |
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