View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-15 (Length: 518)
Name: NF3065R-Insertion-15
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-15 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Original strand, 982741 - 983251
Alignment:
| Q |
8 |
atttagtagggttaatacatgtttacctgtcatcattattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcaagtctactgattcaccc |
107 |
Q |
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| T |
982741 |
atttagtagggttaatacatgtttacatgtcatcattattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcatgtctattgattcaccc |
982840 |
T |
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| Q |
108 |
ttcaactctcaaacaattcttcaacccagagttaactcagtcaagctttcaaaaatcgttcgatgcaacaagtctctcaaccgacctccatgtgattatg |
207 |
Q |
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| T |
982841 |
ttcaactctcaaacaattcttcaacccagagttaactcagtcaggctttcagaaatcattcgatgcaacaagtctctcaaccgacctccacgtgattatg |
982940 |
T |
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| Q |
208 |
ttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatga |
307 |
Q |
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| T |
982941 |
ttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatga |
983040 |
T |
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| Q |
308 |
gtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaat |
407 |
Q |
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| T |
983041 |
gtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaat |
983140 |
T |
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| Q |
408 |
aaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatg |
507 |
Q |
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| T |
983141 |
aaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagtatcttgtgtcttggtcatg |
983240 |
T |
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| Q |
508 |
cattcaaattt |
518 |
Q |
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| T |
983241 |
cattcaaattt |
983251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 419 - 518
Target Start/End: Original strand, 40413224 - 40413323
Alignment:
| Q |
419 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
518 |
Q |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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