View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-16 (Length: 690)
Name: NF3065R-Insertion-16
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 38 - 690
Target Start/End: Complemental strand, 40114973 - 40114323
Alignment:
| Q |
38 |
gagtttactctgcctttaaatgagcccttacaagtagatcttaagattttacattttagattattcaattgttagat--gatattgagttaaaaaatata |
135 |
Q |
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| T |
40114973 |
gagtttactctgcctttaaatgagaccttacaagtagatcgtaagattttatattttagattattcaattattagatcagatattgagttaaaaaatata |
40114874 |
T |
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| Q |
136 |
gaaacaatcatgatattggtatattcgatcattaatatccatgtatggtcggtgaaagctattttatagccattgtgatagattctcgatactttttgtt |
235 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40114873 |
gaaacaatcatgatattggtgtattcaatcattaatatccatgtatggtcggtgaaagctattttatagccattgtgatagattctcaatactttttgtt |
40114774 |
T |
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| Q |
236 |
gttgtacaccatctgatcactgttataaacaaaactgtattatttaagttcattcattaaaatgatgtatgaagtctatattatataccacattacacca |
335 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
40114773 |
gttgtacacaatctgatcactgttataaacaaaactgtattatttaagttcattcattaaaataatgtatgaaggctatattatataccacattacacca |
40114674 |
T |
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| Q |
336 |
tttattcaatgaaccaacaatataaatttctgtttataatag--------cgatgtacataacagtgcctttagaatataaagtaacatataattggtca |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||| ||||||||| |
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| T |
40114673 |
cttattcaatgaaccaacaatataaatttctgtttataatagtgaccagatgatgtacgtaacagtgcctttaaagtataaagtaacataaaattggtca |
40114574 |
T |
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| Q |
428 |
aatctttttaacatattaccgctcgaaagaaatagttaaaggatcattcatattggtcaaatctttttaacatatagatataaataaacaactcatggta |
527 |
Q |
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| T |
40114573 |
aatctttttaacatattaccgctcgaaagaaatagttaaaggatcattcatattggtgaaatctttttaacatatagatataaataaacaactcatggta |
40114474 |
T |
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| Q |
528 |
aatggagaagtaattaaatatgcccaacatataaggcatgagtgagaaagnnnnnnnnggaatattaagannnnnnnnaaccaaaagattaagattgaaa |
627 |
Q |
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| T |
40114473 |
aatggagaagtaattaaatatg---aacatataaggcatgagtgagaaag-aaaaaaaggaatattaaga-tttttttaaccaaaagattaag------- |
40114386 |
T |
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| Q |
628 |
attgaaaattgaaaacttgaatgaatccaacatcagcaccaaagatttgacctagtctactcg |
690 |
Q |
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| T |
40114385 |
attgaaaattgaaaacttgaatgaatccaacatcagcaccaaagatttgacctagtctactcg |
40114323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 374
Target Start/End: Original strand, 35781234 - 35781354
Alignment:
| Q |
252 |
tcactgttataaacaaaactgtattatttaagttcattcattaaaatgatgtatgaagtctatattatataccacattacaccatttattcaatgaacca |
351 |
Q |
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| T |
35781234 |
tcactattataaacaaaattttattttttaggttcattcaat-aaatgatatatgaggtctatgttataaaccacatt-tattatttattcaatgaacaa |
35781331 |
T |
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| Q |
352 |
acaatataaatttctgtttataa |
374 |
Q |
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| T |
35781332 |
aaaatatgaatttttgcttataa |
35781354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 38382075 - 38381986
Alignment:
| Q |
286 |
cattcattaaaatgatgtatgaagtctatattatataccacattacaccatttattcaatgaaccaacaatataaatttctgtttataatag |
377 |
Q |
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| T |
38382075 |
cattcattaaa-tgatgtatgtagtctgtattataaaccaca-tacatcatttaatcaatgaatctaaaatgtaaatttttgcttataatag |
38381986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 29168534 - 29168586
Alignment:
| Q |
295 |
aaatgatgtatgaagtctatattatataccacattacaccatttattcaatgaa |
348 |
Q |
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| T |
29168534 |
aaatgatgtatgtggtctatattatataccaca-tacataatttattcaatgaa |
29168586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 21387626 - 21387677
Alignment:
| Q |
296 |
aatgatgtatgaagtctatattatataccacattacaccatttattcaatgaa |
348 |
Q |
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| T |
21387626 |
aatgatgtatgtagtctttattatataccaca-tacatcatttattaaatgaa |
21387677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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