View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065R-Insertion-17 (Length: 767)

Name: NF3065R-Insertion-17
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065R-Insertion-17
NF3065R-Insertion-17
[»] chr2 (16 HSPs)
chr2 (9-628)||(37881926-37882538)
chr2 (631-767)||(15233757-15233893)
chr2 (628-767)||(43040988-43041127)
chr2 (628-767)||(35793046-35793184)
chr2 (628-767)||(41252414-41252553)
chr2 (628-767)||(31296082-31296221)
chr2 (629-767)||(44104688-44104833)
chr2 (629-767)||(41642891-41643032)
chr2 (644-767)||(31903519-31903641)
chr2 (629-698)||(10118660-10118729)
chr2 (644-766)||(21727684-21727809)
chr2 (627-698)||(36963129-36963200)
chr2 (628-662)||(10112338-10112372)
chr2 (629-662)||(15233999-15234032)
chr2 (629-662)||(43040849-43040882)
chr2 (624-661)||(44104541-44104578)
[»] chr7 (34 HSPs)
chr7 (628-767)||(29427303-29427442)
chr7 (629-767)||(17904163-17904301)
chr7 (629-767)||(26770179-26770317)
chr7 (629-764)||(46467477-46467612)
chr7 (629-767)||(37179471-37179608)
chr7 (629-767)||(6387831-6387969)
chr7 (629-767)||(6389732-6389870)
chr7 (637-767)||(9876271-9876401)
chr7 (629-767)||(29890965-29891103)
chr7 (628-764)||(41921996-41922132)
chr7 (628-767)||(4405108-4405247)
chr7 (633-752)||(31503091-31503210)
chr7 (622-738)||(19523863-19523981)
chr7 (632-728)||(9332364-9332460)
chr7 (644-767)||(33974506-33974632)
chr7 (629-744)||(12252069-12252184)
chr7 (628-744)||(43701550-43701666)
chr7 (629-744)||(29722955-29723070)
chr7 (644-767)||(46689878-46690005)
chr7 (628-744)||(31858257-31858372)
chr7 (649-740)||(9215631-9215722)
chr7 (629-744)||(33379130-33379244)
chr7 (622-744)||(33915710-33915830)
chr7 (644-706)||(49011058-49011120)
chr7 (687-767)||(48049057-48049140)
chr7 (627-662)||(4405353-4405388)
chr7 (627-662)||(29890824-29890859)
chr7 (629-662)||(17904407-17904440)
chr7 (629-662)||(29723381-29723414)
chr7 (629-662)||(37179331-37179364)
chr7 (628-661)||(46467334-46467367)
chr7 (649-744)||(5514797-5514891)
chr7 (624-662)||(6387687-6387725)
chr7 (628-661)||(26770424-26770457)
[»] chr6 (16 HSPs)
chr6 (620-767)||(27312255-27312402)
chr6 (628-767)||(32274433-32274572)
chr6 (631-767)||(8504841-8504977)
chr6 (636-763)||(5003889-5004016)
chr6 (627-767)||(29452681-29452822)
chr6 (628-731)||(12174699-12174802)
chr6 (629-767)||(31171129-31171267)
chr6 (629-744)||(18741947-18742062)
chr6 (690-767)||(2543142-2543219)
chr6 (628-718)||(7156413-7156503)
chr6 (629-677)||(29302500-29302548)
chr6 (628-662)||(27312113-27312147)
chr6 (629-662)||(8504733-8504766)
chr6 (628-662)||(2543325-2543359)
chr6 (729-767)||(7156376-7156414)
chr6 (629-662)||(32274678-32274711)
[»] chr8 (24 HSPs)
chr8 (625-767)||(33837868-33838010)
chr8 (629-767)||(2508935-2509073)
chr8 (629-767)||(28378947-28379085)
chr8 (629-767)||(45334415-45334553)
chr8 (634-759)||(13469652-13469777)
chr8 (628-767)||(25106210-25106349)
chr8 (627-767)||(9739983-9740123)
chr8 (629-763)||(38495615-38495749)
chr8 (625-752)||(27793345-27793472)
chr8 (628-756)||(32183630-32183760)
chr8 (673-767)||(2626377-2626472)
chr8 (627-698)||(27024431-27024502)
chr8 (626-696)||(25978969-25979039)
chr8 (628-744)||(8235161-8235276)
chr8 (664-744)||(3203413-3203492)
chr8 (644-691)||(2626667-2626714)
chr8 (628-662)||(27027655-27027689)
chr8 (624-661)||(13469503-13469540)
chr8 (629-662)||(25106455-25106488)
chr8 (629-662)||(28379191-28379224)
chr8 (629-662)||(33837729-33837762)
chr8 (629-662)||(45334276-45334309)
chr8 (629-661)||(9740231-9740263)
chr8 (629-662)||(38495472-38495505)
[»] chr3 (34 HSPs)
chr3 (629-767)||(18996967-18997105)
chr3 (629-767)||(18999506-18999644)
chr3 (627-767)||(1352135-1352275)
chr3 (628-767)||(29371677-29371816)
chr3 (629-767)||(32677616-32677754)
chr3 (629-767)||(39528749-39528887)
chr3 (629-767)||(41349510-41349648)
chr3 (629-767)||(28228436-28228574)
chr3 (629-767)||(39807118-39807256)
chr3 (628-767)||(55365907-55366046)
chr3 (627-767)||(36737973-36738113)
chr3 (627-767)||(21974147-21974287)
chr3 (627-767)||(21996578-21996718)
chr3 (636-764)||(29014832-29014960)
chr3 (626-767)||(22157255-22157396)
chr3 (635-767)||(38855323-38855455)
chr3 (644-763)||(39518422-39518541)
chr3 (629-767)||(32839949-32840086)
chr3 (644-742)||(49041011-49041107)
chr3 (629-698)||(49319347-49319416)
chr3 (625-662)||(29014686-29014723)
chr3 (628-662)||(36737833-36737867)
chr3 (628-662)||(38855561-38855595)
chr3 (628-662)||(39518651-39518685)
chr3 (628-662)||(41349370-41349404)
chr3 (629-662)||(1351996-1352029)
chr3 (629-662)||(18997211-18997244)
chr3 (629-662)||(18999750-18999783)
chr3 (629-662)||(39528993-39529026)
chr3 (629-661)||(46878980-46879012)
chr3 (654-741)||(837370-837455)
chr3 (624-662)||(29371533-29371571)
chr3 (629-662)||(32677477-32677510)
chr3 (629-662)||(39806979-39807012)
[»] chr5 (24 HSPs)
chr5 (629-767)||(12399085-12399223)
chr5 (629-767)||(34208538-34208676)
chr5 (629-767)||(29874954-29875092)
chr5 (629-767)||(23090298-23090436)
chr5 (624-767)||(4695301-4695444)
chr5 (629-767)||(4145694-4145832)
chr5 (627-767)||(3077595-3077735)
chr5 (644-763)||(42757953-42758072)
chr5 (644-744)||(12096365-12096466)
chr5 (694-767)||(22646048-22646121)
chr5 (629-744)||(41610579-41610694)
chr5 (629-698)||(42793040-42793109)
chr5 (632-696)||(4434783-4434847)
chr5 (626-661)||(41610370-41610405)
chr5 (624-662)||(12398941-12398979)
chr5 (628-662)||(29875198-29875232)
chr5 (628-662)||(42793562-42793596)
chr5 (628-661)||(23090543-23090576)
chr5 (629-662)||(42757805-42757838)
chr5 (628-740)||(19574685-19574795)
chr5 (644-678)||(594328-594362)
chr5 (632-698)||(8718028-8718094)
chr5 (650-744)||(22528023-22528117)
chr5 (628-662)||(34208782-34208816)
[»] chr1 (29 HSPs)
chr1 (626-767)||(47669116-47669257)
chr1 (628-767)||(4817268-4817407)
chr1 (629-767)||(46220259-46220397)
chr1 (629-767)||(10737840-10737978)
chr1 (629-767)||(9831503-9831641)
chr1 (629-767)||(18126851-18126988)
chr1 (624-765)||(4055479-4055620)
chr1 (628-767)||(48564817-48564955)
chr1 (629-767)||(3384734-3384870)
chr1 (644-767)||(8889457-8889580)
chr1 (630-767)||(7414208-7414345)
chr1 (629-731)||(1236205-1236307)
chr1 (649-767)||(39241172-39241290)
chr1 (625-708)||(1749521-1749604)
chr1 (629-698)||(33020206-33020275)
chr1 (652-744)||(26842462-26842552)
chr1 (628-744)||(33846820-33846936)
chr1 (628-744)||(33947042-33947158)
chr1 (686-757)||(37875849-37875920)
chr1 (623-662)||(46220503-46220542)
chr1 (628-662)||(10737700-10737734)
chr1 (624-662)||(37875722-37875760)
chr1 (629-662)||(47669363-47669396)
chr1 (627-660)||(48565063-48565096)
chr1 (630-662)||(1236071-1236103)
chr1 (644-744)||(49112439-49112535)
chr1 (632-662)||(9831747-9831777)
chr1 (628-662)||(33023428-33023462)
chr1 (629-662)||(8889687-8889720)
[»] chr4 (19 HSPs)
chr4 (628-767)||(45590741-45590880)
chr4 (639-767)||(34334342-34334470)
chr4 (628-767)||(8955915-8956054)
chr4 (627-767)||(33288544-33288684)
chr4 (635-765)||(49162108-49162237)
chr4 (626-721)||(30469353-30469448)
chr4 (626-728)||(39481900-39482002)
chr4 (629-767)||(18835705-18835845)
chr4 (644-767)||(50774197-50774325)
chr4 (626-698)||(19256183-19256255)
chr4 (628-744)||(26025685-26025801)
chr4 (695-767)||(36971115-36971186)
chr4 (628-679)||(36016278-36016329)
chr4 (644-698)||(36968353-36968407)
chr4 (644-744)||(33109063-33109163)
chr4 (629-663)||(19257103-19257137)
chr4 (632-662)||(8955779-8955809)
chr4 (624-662)||(45590986-45591024)
chr4 (628-662)||(49162332-49162366)
[»] scaffold0103 (1 HSPs)
scaffold0103 (628-767)||(44618-44758)


Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 9 - 628
Target Start/End: Original strand, 37881926 - 37882538
Alignment:
Q  9 ctgtaatagtattcaagcaaaacaagttcattagaaactaataagtacaatacattagagaaaaagaatttaattaaattcatataacaatttgtaccag 108  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881926 ctgtaatagtattcaagcaaaacaagttcattag----taataagtacaatacattagagaaaaagaatttaattaaattcatataacaatttgtaccag 37882021  T
Q  109 catttttggggaggttgcgccaatttccaggtccatgagtattaatgtagttgataagcataagatcttcttcttgtctccatggaccttttttgagtcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37882022 catttttggggaggttgcgccaatttccaggtccatgagtattaatgtagttgataagcataagatcttcttcttgtgtccatggaccttttttgagtcc 37882121  T
Q  209 acttttatcacaacaaggtgttcttcccatatttcacaaagctagaagatgaatatttttatgaatttcaataggtatagttgaaaagtgcactctaaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37882122 acttttatcacaacaaggtgttcttcccatatttcacaaagctagaagatgaatatttttatgaatttcaataggtatagttgaaaagtgcactctaaga 37882221  T
Q  309 aaccaaaaatagaaagaggaaagtaaactttttgtttgttctaaagtaaagtaagatgaccttgtttttatagacagaagaaatgaaggctatatgtttg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37882222 aaccaaaaatagaaagaggaaagtaaactttttgtttgttctaaagtaaagtaagatgaccttgtttttatagacagaagaaatggaggctatatgtttg 37882321  T
Q  409 aagtcaaaaggatttggtgccgtccatatgcaacgtatttcaacaatctatacacaatatgatcttgtactttacattatcaatgatgcacatttttgta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37882322 aagtcaaaaggatttggtgccgtccatatgcaacgtatttcaacaatctatacacaatatgatcttgtactttacattatcaatgatgcacatttttgta 37882421  T
Q  509 ttttatttgataaaatatatgcatggtatatacgtatgcagtacttgcatacagtatattggagaatatggacccaccaacacacatttaacgatgtgat 608  Q
    ||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37882422 ttttatttgataaaatatatgc---gtatatacgtatgcaatacttgcatacagtatattggacaatatggacccaccaacacacatttaacgatgtgat 37882518  T
Q  609 acagcatcaaaactgaataa 628  Q
    ||||||||||||||||||||    
T  37882519 acagcatcaaaactgaataa 37882538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 631 - 767
Target Start/End: Original strand, 15233757 - 15233893
Alignment:
Q  631 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 730  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  731 tgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtga 15233893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 628 - 767
Target Start/End: Complemental strand, 43041127 - 43040988
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  43041127 atactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttac 43041028  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43041027 ccttgttggaaaacaccataaactattaaagtagttgtga 43040988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 628 - 767
Target Start/End: Complemental strand, 35793184 - 35793046
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttac 35793086  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35793085 ccttgttggaaaacacaataaactattaaagtagttgtga 35793046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 41252414 - 41252553
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  41252414 atactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttat 41252513  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  41252514 ccttgttggaaaatacaataaactattaaagtagttgtga 41252553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 31296082 - 31296221
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  31296082 atactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaatttac 31296181  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    | |||||| |||||||||||||||||||||||||||||||    
T  31296182 ctttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 44104833 - 44104688
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttacc 44104734  T
Q  729 c-------ttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |       ||||||||||||||||||||||||||| ||||||||||    
T  44104733 cttataaattgttggaaaacacaataaactattaaggtagttgtga 44104688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 41642891 - 41643032
Alignment:
Q  629 tactccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 725  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 41642990  T
Q  726 acccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||| ||  |||||||||| |||||||||||||||||||||||    
T  41642991 accttttctggaaaacaccataaactattaaagtagttgtga 41643032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 644 - 767
Target Start/End: Complemental strand, 31903641 - 31903519
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttacccttattggaaaacac 31903543  T
Q  744 aataaactattaaagtagttgtga 767  Q
     |||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtga 31903519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 629 - 698
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 766
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg--gaaaac 741  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||| |  || |||| ||| | ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  742 acaat-aaactattaaagtagttgtg 766  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 698
Target Start/End: Original strand, 36963129 - 36963200
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    ||||||| ||| |||||||||||||| ||||||||||| || |||| |||| |||||  |||||||||||||    
T  36963129 aatactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Original strand, 10112338 - 10112372
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  10112338 atactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 44104541 - 44104578
Alignment:
Q  624 aataatactccctccattccttttcttttgatgtttta 661  Q
    |||| |||||||||||||||||||||||||||||||||    
T  44104541 aatattactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 2e-70; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 628 - 767
Target Start/End: Complemental strand, 29427442 - 29427303
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 29427343  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29427342 ccttgttggaaaacacaataaactattaaagtagttgtga 29427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 17904163 - 17904301
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 17904262  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17904263 cttgttggaaaacacaataaactattaaagtagttgtga 17904301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 26770179 - 26770317
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 26770278  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26770279 cttgttggaaaacacaataaactattaaagtagttgtga 26770317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 629 - 764
Target Start/End: Complemental strand, 46467612 - 46467477
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 46467513  T
Q  729 cttgttggaaaacacaataaactattaaagtagttg 764  Q
     |||||||||||||||||||||||||||||||||||    
T  46467512 tttgttggaaaacacaataaactattaaagtagttg 46467477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 37179608 - 37179471
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttacc 37179510  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37179509 cttgttggaaaacacaataaactattaaagtagttgtga 37179471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 6387969 - 6387831
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 6387870  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6387869 cttgttggaaaacacaataaactattaaagtagttgtga 6387831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 6389732 - 6389870
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 6389831  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6389832 cttgttggaaaacacaataaactattaaagtagttgtga 6389870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 637 - 767
Target Start/End: Original strand, 9876271 - 9876401
Alignment:
Q  637 ccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttgg 736  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  737 aaaacacaataaactattaaagtagttgtga 767  Q
    ||||||| |||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtga 9876401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 29891103 - 29890965
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatc 29891004  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  29891003 cttgatggaaaacacaataaactattaaagtagttgtga 29890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 628 - 764
Target Start/End: Complemental strand, 41922132 - 41921996
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  41922132 atactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagtttac 41922033  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttg 764  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41922032 ccttgttgaaaaacacaataaactattaaagtagttg 41921996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 4405108 - 4405247
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||     
T  4405108 atactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaattttat 4405207  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  4405208 ccttgttggaaaacaccataaattattaaagtagttgtga 4405247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 633 - 752
Target Start/End: Complemental strand, 31503210 - 31503091
Alignment:
Q  633 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttg 732  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttacccttg 31503111  T
Q  733 ttggaaaacacaataaacta 752  Q
    ||||||||||| ||||||||    
T  31503110 ttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 622 - 738
Target Start/End: Complemental strand, 19523981 - 19523863
Alignment:
Q  622 tgaataatactccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctc 719  Q
    |||||||||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  19523981 tgaataatactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatc 19523882  T
Q  720 aagtttacccttgttggaa 738  Q
    |||||||||||||||||||    
T  19523881 aagtttacccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 632 - 728
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  632 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 644 - 767
Target Start/End: Original strand, 33974506 - 33974632
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  744 a--at-aaactattaaagtagttgtga 767  Q
    |  || |||||||||||| ||||||||    
T  33974606 accataaaactattaaaggagttgtga 33974632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 629 - 744
Target Start/End: Original strand, 12252069 - 12252184
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| || || ||||| | |||||||| |||||||||     
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttact 12252168  T
Q  729 cttgttggaaaacaca 744  Q
    || |||| ||||||||    
T  12252169 ctagttgaaaaacaca 12252184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 628 - 744
Target Start/End: Original strand, 43701550 - 43701666
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||  ||||||||||||| |  |||| |||| |||   ||| |||||    
T  43701550 atactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatattttttatccaattttac 43701649  T
Q  728 ccttgttggaaaacaca 744  Q
    |||||||| ||||||||    
T  43701650 ccttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 629 - 744
Target Start/End: Original strand, 29722955 - 29723070
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||  |  ||||||| | |||   ||| ||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgttttataatttttattactttttatccaattttacc 29723054  T
Q  729 cttgttggaaaacaca 744  Q
    ||||||| ||||||||    
T  29723055 cttgttgaaaaacaca 29723070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 644 - 767
Target Start/End: Original strand, 46689878 - 46690005
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa---a 740  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||   ||| |||| ||||| ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  741 cacaat-aaactattaaagtagttgtga 767  Q
    ||| || |||||||||||| ||||||||    
T  46689978 cacgataaaactattaaagaagttgtga 46690005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 628 - 744
Target Start/End: Complemental strand, 31858372 - 31858257
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||  ||||  ||||||||||||||| ||||| | || ||||| ||| |||||    
T  31858372 atactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaatttac 31858274  T
Q  728 ccttgttggaaaacaca 744  Q
    ||| |||| ||||||||    
T  31858273 cctcgttgaaaaacaca 31858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 649 - 740
Target Start/End: Complemental strand, 9215722 - 9215631
Alignment:
Q  649 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaa 740  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| || || |||| |||| |||| ||||||||||||| ||||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaa 9215631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 629 - 744
Target Start/End: Complemental strand, 33379244 - 33379130
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||| || || ||| ||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttaggatttttaatatttttatc-caattttacc 33379146  T
Q  729 cttgttggaaaacaca 744  Q
    ||||||| ||||||||    
T  33379145 cttgttgaaaaacaca 33379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 622 - 744
Target Start/End: Original strand, 33915710 - 33915830
Alignment:
Q  622 tgaataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 721  Q
    ||||||||||||||||||||  |||||||||| |||||| ||| || ||||||||| |||||  ||||||||||||||| ||||| | || ||||| |||    
T  33915710 tgaataatactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaa 33915808  T
Q  722 gtttacccttgttggaaaacaca 744  Q
    ||||| |||||||| ||||||||    
T  33915809 gttta-ccttgttgaaaaacaca 33915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 706
Target Start/End: Complemental strand, 49011120 - 49011058
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 706  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagtatattta 49011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 687 - 767
Target Start/End: Original strand, 48049057 - 48049140
Alignment:
Q  687 ttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtga 767  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtga 48049140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 662
Target Start/End: Complemental strand, 4405388 - 4405353
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||||    
T  4405388 aatactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 662
Target Start/End: Original strand, 29890824 - 29890859
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||||    
T  29890824 aatactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 661
Target Start/End: Original strand, 46467334 - 46467367
Alignment:
Q  628 atactccctccattccttttcttttgatgtttta 661  Q
    ||||||||||||||||||||||||||||||||||    
T  46467334 atactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 744
Target Start/End: Original strand, 5514797 - 5514891
Alignment:
Q  649 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 744  Q
    |||| |||||||||||||| || ||||||| ||||  ||||||  ||||||| ||||| |||| | || |||||||||||||||||  ||||||||    
T  5514797 ttttaatgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatt-tattttcaagtttacccttgttaaaaaacaca 5514891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 6387687 - 6387725
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttag 662  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  6387687 aatagtacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 661
Target Start/End: Complemental strand, 26770457 - 26770424
Alignment:
Q  628 atactccctccattccttttcttttgatgtttta 661  Q
    ||||||||||||||| ||||||||||||||||||    
T  26770457 atactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 620 - 767
Target Start/End: Complemental strand, 27312402 - 27312255
Alignment:
Q  620 actgaataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctc 719  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  27312402 actgaacaatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 27312303  T
Q  720 aagtttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27312302 aagtttacccttgttggaaaacacaataaactattaaagtagttgtga 27312255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 32274433 - 32274572
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 32274532  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32274533 ccttgttggaaaacacaataaactattaaagtagttgtga 32274572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 631 - 767
Target Start/End: Complemental strand, 8504977 - 8504841
Alignment:
Q  631 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 730  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  731 tgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtga 8504841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 636 - 763
Target Start/End: Original strand, 5003889 - 5004016
Alignment:
Q  636 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 735  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 5003988  T
Q  736 gaaaacacaataaactattaaagtagtt 763  Q
    ||||||||||||||||||||||||||||    
T  5003989 gaaaacacaataaactattaaagtagtt 5004016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 627 - 767
Target Start/End: Complemental strand, 29452822 - 29452681
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagttt 725  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||| ||||||||| ||||||||||||||||    
T  29452822 aatactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagttt 29452723  T
Q  726 acccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    || ||||||||||||||| ||||||||||||| |||||||||    
T  29452722 acacttgttggaaaacaccataaactattaaaatagttgtga 29452681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 628 - 731
Target Start/End: Original strand, 12174699 - 12174802
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12174699 atactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 12174798  T
Q  728 cctt 731  Q
    ||||    
T  12174799 cctt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 31171267 - 31171129
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||| || |||||| |||| |||||||||||||||||||||||||| |    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttatc 31171168  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
     || |||||||||||  |||||||||||| |||||||||    
T  31171167 tttattggaaaacaccttaaactattaaaatagttgtga 31171129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 629 - 744
Target Start/End: Original strand, 18741947 - 18742062
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||| ||||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttacc 18742046  T
Q  729 cttgttggaaaacaca 744  Q
    ||||||| ||||||||    
T  18742047 cttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 690 - 767
Target Start/End: Original strand, 2543142 - 2543219
Alignment:
Q  690 atgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtga 2543219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 628 - 718
Target Start/End: Complemental strand, 7156503 - 7156413
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttct 718  Q
    |||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7156503 atactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgttttct 7156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 29302548 - 29302500
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatatt 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 2543359 - 2543325
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||| |||||||||||||||||||    
T  2543359 atactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 729 - 767
Target Start/End: Complemental strand, 7156414 - 7156376
Alignment:
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  7156414 cttgttggaaaacaccataaactattaaagtaattgtga 7156376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 6e-70; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 625 - 767
Target Start/End: Complemental strand, 33838010 - 33837868
Alignment:
Q  625 ataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtt 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33838010 ataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtt 33837911  T
Q  725 tacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33837910 tacccttgttggaaaacacaataaactattaaagtagttgtga 33837868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 2509073 - 2508935
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 2508974  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  2508973 cttgttggaaaacacagtaaactattaaagtagttgtga 2508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 28378947 - 28379085
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28379046  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28379047 cttgttggaaaacacaataaactattaaagtagttgtga 28379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 45334553 - 45334415
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttacc 45334454  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45334453 cttgttggaaaacacaataaactattaaagtagttgtga 45334415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 634 - 759
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  634 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  734 tggaaaacacaataaactattaaagt 759  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 25106210 - 25106349
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||    
T  25106210 atactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagtttac 25106309  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  25106310 ccttgatggaaaacacaataaactattaaagtagttgtga 25106349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 627 - 767
Target Start/End: Original strand, 9739983 - 9740123
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||| |||||||||||||    
T  9739983 aatactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagttta 9740082  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
     |||||||| |||||||||||||||||||||||||||||||    
T  9740083 tccttgttgaaaaacacaataaactattaaagtagttgtga 9740123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 629 - 763
Target Start/End: Complemental strand, 38495749 - 38495615
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacc 38495650  T
Q  729 cttgttggaaaacacaataaactattaaagtagtt 763  Q
    |||||||||||||||||||||||||||||||||||    
T  38495649 cttgttggaaaacacaataaactattaaagtagtt 38495615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 625 - 752
Target Start/End: Complemental strand, 27793472 - 27793345
Alignment:
Q  625 ataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtt 724  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  27793472 ataatactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtt 27793373  T
Q  725 tacccttgttggaaaacacaataaacta 752  Q
    ||| ||||||||||||||||||||||||    
T  27793372 tactcttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 628 - 756
Target Start/End: Complemental strand, 32183760 - 32183630
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||| |||||||||    
T  32183760 atactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagtttac 32183661  T
Q  728 ccttgttggaaaacaca--ataaactattaa 756  Q
    |||||||||||||||||  ||||||||||||    
T  32183660 ccttgttggaaaacacaccataaactattaa 32183630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 673 - 767
Target Start/End: Complemental strand, 2626472 - 2626377
Alignment:
Q  673 atattccaaaacttttgatgttttagtaaatttattatt-gttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtga 2626377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 627 - 698
Target Start/End: Original strand, 27024431 - 27024502
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  27024431 aatactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 626 - 696
Target Start/End: Complemental strand, 25979039 - 25978969
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 696  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  25979039 taatactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 628 - 744
Target Start/End: Original strand, 8235161 - 8235276
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||  |  |||| |||| |||  |||| |||||    
T  8235161 atactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgttttaagatttttaatatt-tttcttcaattttac 8235259  T
Q  728 ccttgttggaaaacaca 744  Q
    |||||||| ||||||||    
T  8235260 ccttgttgaaaaacaca 8235276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 744
Target Start/End: Complemental strand, 3203492 - 3203413
Alignment:
Q  664 acttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 744  Q
    ||||||||||||||  ||||  ||||||||||||||| ||||| |||| |||||||||||||| | |||||| ||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagtttatctttgttgaaaaacaca 3203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 691
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgat 691  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 27027689 - 27027655
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  27027689 atactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 13469503 - 13469540
Alignment:
Q  624 aataatactccctccattccttttcttttgatgtttta 661  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13469503 aataatactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 661
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  629 tactccctccattccttttcttttgatgtttta 661  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 6e-70; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 18996967 - 18997105
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18997066  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18997067 cttgttggaaaacacaataaactattaaagtagttgtga 18997105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 18999506 - 18999644
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18999605  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18999606 cttgttggaaaacacaataaactattaaagtagttgtga 18999644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 627 - 767
Target Start/End: Complemental strand, 1352275 - 1352135
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1352275 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 1352176  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1352175 cccttgttggaaaacacaataaactattaaagtagttgtga 1352135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 628 - 767
Target Start/End: Complemental strand, 29371816 - 29371677
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29371816 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 29371717  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  29371716 ccttgttggaaaacacaataaactattaaagtacttgtga 29371677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 32677754 - 32677616
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32677654 cttgttggaaaacacaataaactattaaagtagttgtga 32677616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 39528749 - 39528887
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39528848  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39528849 cttgttggaaaacacaataaactattaaagtagttgtga 39528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 41349648 - 41349510
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 41349549  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41349548 cttgttggaaaacacaataaactattaaagtagttgtga 41349510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 28228436 - 28228574
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28228535  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  28228536 cttgttggaaaatacaataaactattaaagtagctgtga 28228574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 39807256 - 39807118
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39807157  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    || ||||||||||||||||||||||||||||||||||||    
T  39807156 ctcgttggaaaacacaataaactattaaagtagttgtga 39807118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 55365907 - 55366046
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  55365907 atactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagtttac 55366006  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  55366007 ccttgttagaaaacacaataaactattaaagtagttgtga 55366046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 627 - 767
Target Start/End: Complemental strand, 36738113 - 36737973
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  36738113 aatactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagttta 36738014  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  36738013 ctcttgttggaaaacacaataaactattaaagtagttgtga 36737973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 627 - 767
Target Start/End: Original strand, 21974147 - 21974287
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  21974147 aatattccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggttta 21974246  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    || |||||||||||||| ||||| |||||||||||||||||    
T  21974247 cctttgttggaaaacaccataaaatattaaagtagttgtga 21974287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 627 - 767
Target Start/End: Original strand, 21996578 - 21996718
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  21996578 aatattccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggttta 21996677  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    || |||||||||||||| ||||| |||||||||||||||||    
T  21996678 cctttgttggaaaacaccataaaatattaaagtagttgtga 21996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 636 - 764
Target Start/End: Complemental strand, 29014960 - 29014832
Alignment:
Q  636 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 735  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 29014861  T
Q  736 gaaaacacaataaactattaaagtagttg 764  Q
    ||||||||| |||||||||||||||||||    
T  29014860 gaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 626 - 767
Target Start/End: Original strand, 22157255 - 22157396
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 725  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||    
T  22157255 taatattccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggttt 22157354  T
Q  726 acccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||| |||||||||||||| ||||| |||||||||||||||||    
T  22157355 acctttgttggaaaacaccataaaatattaaagtagttgtga 22157396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 635 - 767
Target Start/End: Original strand, 38855323 - 38855455
Alignment:
Q  635 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 734  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  735 ggaaaacacaataaactattaaagtagttgtga 767  Q
    | ||||||| |||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtga 38855455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 644 - 763
Target Start/End: Original strand, 39518422 - 39518541
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  744 aataaactattaaagtagtt 763  Q
    ||||||||||||||||||||    
T  39518522 aataaactattaaagtagtt 39518541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 32839949 - 32840086
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||  |||  ||||||||||||||| || |||||||| |||||| ||||||  |    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttcttaagtttgtc 32840047  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  32840048 cttgttagaaaacacaataaactattaaaatagttgtga 32840086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 49041107 - 49041011
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaaca 742  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| |||  ||||| || |||||||||||||| ||||||    
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaaca 49041011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 629 - 698
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    |||| |||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 29014686 - 29014723
Alignment:
Q  625 ataatactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29014686 ataatactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 39518685 - 39518651
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  39518685 atactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Original strand, 41349370 - 41349404
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  41349370 atactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 661
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  629 tactccctccattccttttcttttgatgtttta 661  Q
    |||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 741
Target Start/End: Original strand, 837370 - 837455
Alignment:
Q  654 atgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaac 741  Q
    |||||||||||||||||||| |||| |||| ||||||| |||||||| | ||| |||| |||| |||||||||||  ||||| |||||    
T  837370 atgttttagaacttcaactaaattctaaaa-ttttgatattttagtataattaatatt-ttttttcaagtttacctgtgttgaaaaac 837455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 29371533 - 29371571
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttag 662  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  29371533 aatactactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 12399223 - 12399085
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 12399124  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12399123 cttgttggaaaacacaataaactattaaagtagttgtga 12399085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 34208538 - 34208676
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 34208637  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34208638 cttgttggaaaacacaataaactattaaagtagttgtga 34208676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 29874954 - 29875092
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 29875053  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29875054 cttgttggaaaacacaataaactattaaagtagttgtga 29875092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 23090298 - 23090436
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 23090397  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23090398 cttgttggaaaacacaataaactattaaagtagttgtga 23090436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 624 - 767
Target Start/End: Complemental strand, 4695444 - 4695301
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagt 723  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  4695444 aatagtactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagt 4695345  T
Q  724 ttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4695344 ttacccttgttggaaaacacaataaactattaaagtagttgtga 4695301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 4145694 - 4145832
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagtttacc 4145793  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4145794 cttgttggaaaacacaataaactattaaagtagttgtga 4145832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 627 - 767
Target Start/End: Original strand, 3077595 - 3077735
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3077595 aatactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 3077694  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  3077695 tccttgttggaaaacacaataaactattaaagtagttgtga 3077735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 644 - 763
Target Start/End: Complemental strand, 42758072 - 42757953
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 42757973  T
Q  744 aataaactattaaagtagtt 763  Q
     |||||||||||||||||||    
T  42757972 gataaactattaaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 644 - 744
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagta-aatttattattgttttctcaagtttacccttgttggaaaaca 742  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |||| |||| ||||||||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  743 ca 744  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 22646121 - 22646048
Alignment:
Q  694 tttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtga 22646048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 629 - 744
Target Start/End: Complemental strand, 41610694 - 41610579
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||| || | |||   ||| ||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttagaaattttaatactttttatccaattttacc 41610595  T
Q  729 cttgttggaaaacaca 744  Q
    ||||||  ||||||||    
T  41610594 cttgttaaaaaacaca 41610579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 629 - 698
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 696
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  632 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 696  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 626 - 661
Target Start/End: Original strand, 41610370 - 41610405
Alignment:
Q  626 taatactccctccattccttttcttttgatgtttta 661  Q
    ||||||||||||||||||||||||||||||||||||    
T  41610370 taatactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 12398941 - 12398979
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttag 662  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12398941 aatagtactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 29875232 - 29875198
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  29875232 atactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 42793596 - 42793562
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  42793596 atactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 661
Target Start/End: Complemental strand, 23090576 - 23090543
Alignment:
Q  628 atactccctccattccttttcttttgatgtttta 661  Q
    ||||||||||||||||||||||||||||||||||    
T  23090576 atactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 740
Target Start/End: Original strand, 19574685 - 19574795
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||  || |||||||||||||||| ||||||| || ||| |||||  ||| |||||||| || ||||| |||| ||||| |||| | ||    
T  19574685 atactccctccattt-ttgtcttttgatgttttaggacttcaattaaatttcaaaatatttaatgttttaatatatttaatatt-ttttcccaaggtcac 19574782  T
Q  728 ccttgttggaaaa 740  Q
    |||||||| ||||    
T  19574783 ccttgttgaaaaa 19574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 678
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattc 678  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 8718028 - 8718094
Alignment:
Q  632 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    |||||||||| ||||||||||||| |||||  | ||||||| |||| |||||  |||||||||||||    
T  8718028 tccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 744
Target Start/End: Original strand, 22528023 - 22528117
Alignment:
Q  650 tttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 744  Q
    |||||| |||||| ||||||| |||| |||||||  ||||||||||||||| ||||| || | || |  ||| |||||| |||||| ||||||||    
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagtacatttaataattttattccaaatttacctttgttgaaaaacaca 22528117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 34208816 - 34208782
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||| ||||||||||||||    
T  34208816 atactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 626 - 767
Target Start/End: Original strand, 47669116 - 47669257
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  47669116 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagttt 47669215  T
Q  726 acccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47669216 acccttgttggaaaacacaataaactattaaagtagttgtga 47669257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 4817268 - 4817407
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  4817268 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagtttac 4817367  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4817368 ccttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 46220259 - 46220397
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 46220358  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46220359 cttgttggaaaacacaataaactattaaagtagttgtga 46220397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 10737978 - 10737840
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 10737879  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10737878 cttgttggaaaacacaataaactattaaagtagttgtga 10737840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 9831503 - 9831641
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttacc 9831602  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  9831603 cttgttggaaaacacaataaactattaaaatagttgtga 9831641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 18126851 - 18126988
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18126950  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  18126951 cttgttggaaaacacaacaaactatt-aagtagttgtga 18126988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 624 - 765
Target Start/End: Original strand, 4055479 - 4055620
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagt 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  4055479 aataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagt 4055578  T
Q  724 ttacccttgttggaaaacacaataaactattaaagtagttgt 765  Q
    |||||||| ||||||||||||||  ||| |||||||||||||    
T  4055579 ttacccttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 48564817 - 48564955
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  48564817 atactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttac 48564915  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  48564916 ccttgatggaaaacacaataaactattaaagtagttgtga 48564955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 629 - 767
Target Start/End: Complemental strand, 3384870 - 3384734
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 3384773  T
Q  729 cttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3384772 cttgttggaaaacacaataaactattaaagtagttgtga 3384734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 644 - 767
Target Start/End: Original strand, 8889457 - 8889580
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacac 8889556  T
Q  744 aataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||||||||    
T  8889557 aataaactattaaagtagttgtga 8889580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 630 - 767
Target Start/End: Original strand, 7414208 - 7414345
Alignment:
Q  630 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 729  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  730 ttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtga 7414345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 629 - 731
Target Start/End: Complemental strand, 1236307 - 1236205
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 728  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttacc 1236208  T
Q  729 ctt 731  Q
    |||    
T  1236207 ctt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 649 - 767
Target Start/End: Original strand, 39241172 - 39241290
Alignment:
Q  649 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaag-tttacccttgttggaaaacacaata 747  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||||| | ||||| ||||| ||||||| ||||||| |||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccata 39241270  T
Q  748 aactattaaagtagttgtga 767  Q
    ||||||||||||||||||||    
T  39241271 aactattaaagtagttgtga 39241290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 625 - 708
Target Start/End: Complemental strand, 1749604 - 1749521
Alignment:
Q  625 ataatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatt 708  Q
    |||||||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  1749604 ataatacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 629 - 698
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 652 - 744
Target Start/End: Original strand, 26842462 - 26842552
Alignment:
Q  652 tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 744  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 628 - 744
Target Start/End: Complemental strand, 33846936 - 33846820
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagttta 726  Q
    ||||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||    
T  33846936 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33846838  T
Q  727 cccttgttggaaaacaca 744  Q
    ||||||||  ||||||||    
T  33846837 cccttgttaaaaaacaca 33846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 628 - 744
Target Start/End: Original strand, 33947042 - 33947158
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagttta 726  Q
    ||||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||    
T  33947042 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33947140  T
Q  727 cccttgttggaaaacaca 744  Q
    ||||||||  ||||||||    
T  33947141 cccttgttaaaaaacaca 33947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 686 - 757
Target Start/End: Original strand, 37875849 - 37875920
Alignment:
Q  686 tttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaa 757  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||||| |||| |||  | |||||||||    
T  37875849 tttgatgttttagtatatttaatgttgttttctcaagtttatccttgttgaaaaatacaccatactattaaa 37875920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 46220542 - 46220503
Alignment:
Q  623 gaataatactccctccattccttttcttttgatgttttag 662  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  46220542 gaatgatactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 662
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 37875722 - 37875760
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  37875722 aataatactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 660
Target Start/End: Complemental strand, 48565096 - 48565063
Alignment:
Q  627 aatactccctccattccttttcttttgatgtttt 660  Q
    ||||||||||||||||||||||||||||||||||    
T  48565096 aatactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 662
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  630 actccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 744
Target Start/End: Complemental strand, 49112535 - 49112439
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    |||||||||||||||    ||||| |||||||||  ||||  ||||||||||||||| |||||  ||||||||   || ||||||||||||| |||||||    
T  49112535 ttttcttttgatgtt----aactttaactatattttaaaatatttgatgttttagtatatttaacattgtttttctaaatttacccttgttgaaaaacac 49112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 662
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  632 tccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 33023462 - 33023428
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||||||||||| |||||||    
T  33023462 atactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  629 tactccctccattccttttcttttgatgttttag 662  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 45590741 - 45590880
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  45590741 atactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagtttac 45590840  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  45590841 ctttgttggaaaacacaataaactattaaagtagttgtga 45590880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 639 - 767
Target Start/End: Original strand, 34334342 - 34334470
Alignment:
Q  639 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaa 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  739 aacacaataaactattaaagtagttgtga 767  Q
    |||||||||||||||||||||||||||||    
T  34334442 aacacaataaactattaaagtagttgtga 34334470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 628 - 767
Target Start/End: Complemental strand, 8956054 - 8955915
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 727  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  8956054 atactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagtttac 8955955  T
Q  728 ccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  8955954 ccttattggaaaacacaataaattattaaagtagttgtga 8955915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 627 - 767
Target Start/End: Complemental strand, 33288684 - 33288544
Alignment:
Q  627 aatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33288684 aatactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 33288585  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||| ||||||||||||||||| |||  ||||||||||||||    
T  33288584 cccatgttggaaaacacaatatactgataaagtagttgtga 33288544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 635 - 765
Target Start/End: Original strand, 49162108 - 49162237
Alignment:
Q  635 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 734  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  735 ggaaaacacaataaactattaaagtagttgt 765  Q
    ||||||||| |||||||||||||||||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgt 49162237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 626 - 721
Target Start/End: Complemental strand, 30469448 - 30469353
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 721  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30469448 taatactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 626 - 728
Target Start/End: Original strand, 39481900 - 39482002
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 725  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39481900 taatattccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggttt 39481999  T
Q  726 acc 728  Q
    |||    
T  39482000 acc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 629 - 767
Target Start/End: Original strand, 18835705 - 18835845
Alignment:
Q  629 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagt--aaatttattattgttttctcaagttta 726  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||| ||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaattta 18835804  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
     ||||||| |||||||  |||||||||||||||||||||||    
T  18835805 tccttgttagaaaacatcataaactattaaagtagttgtga 18835845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 644 - 767
Target Start/End: Complemental strand, 50774325 - 50774197
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatg-----ttttagtaaatttattattgttttctcaagtttacccttgttggaa 738  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||      ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  739 aacacaataaactattaaagtagttgtga 767  Q
    ||||||||||||||||||| |||| ||||    
T  50774225 aacacaataaactattaaattagtcgtga 50774197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 626 - 698
Target Start/End: Original strand, 19256183 - 19256255
Alignment:
Q  626 taatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19256183 taatactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 628 - 744
Target Start/End: Complemental strand, 26025801 - 26025685
Alignment:
Q  628 atactccctccattcctttt-cttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    ||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||  |||||  |||||||| ||||| |||| ||||| ||||||||    
T  26025801 atactccctccatttttttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagttta 26025703  T
Q  727 cccttgttggaaaacaca 744  Q
    ||||||||| ||||||||    
T  26025702 cccttgttgaaaaacaca 26025685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 36971115 - 36971186
Alignment:
Q  695 ttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtga 36971186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 679
Target Start/End: Original strand, 36016278 - 36016329
Alignment:
Q  628 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 698
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 698  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

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Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 644 - 744
Target Start/End: Complemental strand, 33109163 - 33109063
Alignment:
Q  644 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 743  Q
    ||||||||| ||||||||| ||||||||||||||  ||||   |||||||||||||| ||||| |||| |||||| ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  744 a 744  Q
    |    
T  33109063 a 33109063  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 663
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  629 tactccctccattccttttcttttgatgttttaga 663  Q
    |||||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 662
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  632 tccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 662
Target Start/End: Complemental strand, 45591024 - 45590986
Alignment:
Q  624 aataatactccctccattccttttcttttgatgttttag 662  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  45591024 aatactactccctccattcattttcttttgatgttttag 45590986  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 49162366 - 49162332
Alignment:
Q  628 atactccctccattccttttcttttgatgttttag 662  Q
    |||||||||||||||| ||||||||||||||||||    
T  49162366 atactccctccattccctttcttttgatgttttag 49162332  T

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Target: scaffold0103 (Bit Score: 113; Significance: 8e-57; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 628 - 767
Target Start/End: Original strand, 44618 - 44758
Alignment:
Q  628 atactccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 726  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  44618 atactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagttta 44717  T
Q  727 cccttgttggaaaacacaataaactattaaagtagttgtga 767  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  44718 cccttgttgaaaaacacaataaactattaaagtagttgtga 44758  T

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