View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-20 (Length: 905)
Name: NF3065R-Insertion-20
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-20 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 424 - 692
Target Start/End: Original strand, 18013797 - 18014063
Alignment:
| Q |
424 |
acaagatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg |
523 |
Q |
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| T |
18013797 |
acaagatatcttctttcaaactcaattggtat--cattcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg |
18013894 |
T |
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| Q |
524 |
taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataagctaactttcca |
623 |
Q |
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| T |
18013895 |
taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaattacacaacttttgagtatcataaaactataagctaactttcca |
18013994 |
T |
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| Q |
624 |
atgcaactggcttcactcataaatgagttatatagctcaagctataagaatttcatttcggctgtgtca |
692 |
Q |
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| T |
18013995 |
atgcaactggcttcgctcatatatgagttatatagctcaagttataagaattttattccggctatgtca |
18014063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 33013460 - 33013503
Alignment:
| Q |
231 |
agcatctgaagaccacgtcagcagctgaagactctgacctgttt |
274 |
Q |
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| T |
33013460 |
agcatctgaagaccatgttagcagctgaagactctgaccagttt |
33013503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 428 - 611
Target Start/End: Original strand, 31908914 - 31909094
Alignment:
| Q |
428 |
gatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttgtaaa |
527 |
Q |
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| T |
31908914 |
gatgtctgttttcaaacacaattggttt--cactcaaaaaggagttact-atctcaagatacagaggttctattgtgactgatgcacattaacttgcaaa |
31909010 |
T |
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| Q |
528 |
acataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataa |
611 |
Q |
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| T |
31909011 |
acagaacaattcatttcataatgttacgaaataatgtacaaataatataaaattacacaactttcaagtatcataatactataa |
31909094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 6604 - 6681
Alignment:
| Q |
192 |
tcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgacc |
269 |
Q |
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| T |
6604 |
tcagaagcatctgaaggaatgaggactctgaaggattcatacatctgaataccacgtcagcagctgaagactctgacc |
6681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 35036565 - 35036483
Alignment:
| Q |
186 |
tttcgttcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgac |
268 |
Q |
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| T |
35036565 |
tttcgtttagaagcatctgaaggaatgaagactctaaagacattatgcatttgaagaccacatcagcatatgaagactctgac |
35036483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 20648913 - 20648875
Alignment:
| Q |
229 |
caagcatctgaagaccacgtcagcagctgaagactctga |
267 |
Q |
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| T |
20648913 |
caagcatctgaagaccacgtcaacagctgaagactctga |
20648875 |
T |
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