View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-21 (Length: 907)
Name: NF3065R-Insertion-21
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-21 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 418 - 903
Target Start/End: Original strand, 43076266 - 43076750
Alignment:
| Q |
418 |
tgcaacatgtcccgtgcctgtggtttagaatttagattgttcatctctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatct |
517 |
Q |
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| T |
43076266 |
tgcaacatgtcctgtgcctgtggtttagaatttagattgttcatctctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatct |
43076365 |
T |
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| Q |
518 |
atctatctctctgtaaatgattctctgattcagcttcagttaatatatggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatt |
617 |
Q |
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| T |
43076366 |
atctatctctctgtaaatgattctctgattcagcttcacttaatatatggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatt |
43076465 |
T |
|
| Q |
618 |
tttgtatagttccaaatcacattctccacctacatttttcttttgtttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttct |
717 |
Q |
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| T |
43076466 |
tttgtatagttccaaatcacattctccacctacatttttcttttgtttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttct |
43076565 |
T |
|
| Q |
718 |
atgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatacaaagggacttcgaccaaaacccttctactggatttggaatgtctg |
817 |
Q |
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| T |
43076566 |
atgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatacaaagggacttcgaccaaaa-ccttctactggatttggaatgtctg |
43076664 |
T |
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| Q |
818 |
ccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttaga |
903 |
Q |
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| T |
43076665 |
ccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttaga |
43076750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 43075856 - 43076177
Alignment:
| Q |
8 |
aacaacaacaacttaattatatatacaagtatccaactattagcatgcagctccagaaaagttagcacttcgcataataatgcatactaaacattgctaa |
107 |
Q |
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| T |
43075856 |
aacaacaacaacttaattatatatacaagtatccaactattagcatgcagctcccgaaaagttagcacttcgcataataatgcatactaaacattgctaa |
43075955 |
T |
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| Q |
108 |
caagattcatcctaacaatatcttttcaacgtcatttttctcaccagttgtaattttgtagatatcactagtatacgtaacaatttataaagtggtgaga |
207 |
Q |
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| T |
43075956 |
caagattcatcctaacaatatcttttcaacgtcatttttctcactatttgtaattttgtagatatcactagtatacacaacaatttataaagtggtgaga |
43076055 |
T |
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| Q |
208 |
tctacgtaaattttaaggtgaaatatagtttcgtaaagagcttggaaagtgagtgttatgttatcccaacaagaatatttttcacattcacacacaagaa |
307 |
Q |
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| T |
43076056 |
tctacgtaaattttactgtgaaatatagtttcgtaaagagcttggaaagtgagtgttatgttatcccaacaagaatacttttcacattcacacacaagaa |
43076155 |
T |
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| Q |
308 |
taaagggactcacgggaagcac |
329 |
Q |
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| T |
43076156 |
taaagggactcacgggaagcac |
43076177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 842 - 896
Target Start/End: Complemental strand, 33966889 - 33966835
Alignment:
| Q |
842 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgt |
896 |
Q |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgt |
33966835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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