View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065R-Insertion-22 (Length: 930)
Name: NF3065R-Insertion-22
Description: NF3065R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065R-Insertion-22 |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 8 - 882
Target Start/End: Complemental strand, 47329775 - 47328908
Alignment:
| Q |
8 |
atcttacactatatacttgccgacccaaaatataaacattttgtttttaaatatctcacagatataagtttaatttcaaattctcaaatatatttattat |
107 |
Q |
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| T |
47329775 |
atcttacactatatacttgccgacccaaaatataaacattttgtttttaaatatctcacaaatataagtttaatttcaaattctcaaatatatttattat |
47329676 |
T |
|
| Q |
108 |
tattgggttt-cataagttttctcaactagagataatcatatcaaa-tgcattttagaaattaaat--gagtttctttctcatactagattcaaacattg |
203 |
Q |
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| T |
47329675 |
tattgggttttcataggttttctcaactagagataatcatattaaaatgcatttcagaaattaaatatgagtttatttctcatactagattcgaacattg |
47329576 |
T |
|
| Q |
204 |
gttcgccacgttgtgagagtctaaccttttccattagactcaactcaacccactctttgcttgaatatatttattattattttggtccttaagagaaggt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47329575 |
gttcgccacgttgtgagagtctaaccttttccattagactcaactcaacccactgtttgcttagatatatttattattattttggtccttaagagaaggt |
47329476 |
T |
|
| Q |
304 |
ggcccactcatctcacttatatatgatcaaaattgctcnnnnnnnnngtggaaaacaaaatcagacaattgtcatacttgacagagcaaaatacaatgaa |
403 |
Q |
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| T |
47329475 |
ggcccactcatctcacttatatatgatcaaaattgctc-aaaaaaaagtggaaaacaaaatcagacaattgtcatacttgacagagcaaaatacaattaa |
47329377 |
T |
|
| Q |
404 |
gtctaattagtgctgctaaatgtcttgagaaatgaaaattttgaatacattcatatacaaaaggatgttttaaccaaatttcgtacacaaaatacaaaca |
503 |
Q |
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| T |
47329376 |
gtctaatcagtactgctaaatgtcttgagaaatgaaaattatgaatacattcatatac-aaaggatgttttaagcaaatttcatacacaaaatacaaaca |
47329278 |
T |
|
| Q |
504 |
tcaaatacattannnnnnnnnggactcaaaatacaatatatttattaatatacatgaaaattgcaaaagcagcttctaataaaaggatagtcatagaggt |
603 |
Q |
| |
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| T |
47329277 |
tcaaatacaatatttttttttggactcaaaatacaatatatttattaatatacatgaaaattgcaaaagcagcttctaataaaaggatagtcatagaggt |
47329178 |
T |
|
| Q |
604 |
agtacatttactagtgagtaacttaaatatgagacaaaaaattgaaggcaatagtaatgaagacaagagtgaaagtagcagccataggtgtggttgaact |
703 |
Q |
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| T |
47329177 |
agtacatttactagtgagtaacttaaatatgagacaaaaaattgaaggcaatagtaatgaagacaagagtgaaagtagcagccataggtgtggttgaact |
47329078 |
T |
|
| Q |
704 |
ctgtggtggaagagcagtaaacacctggtccagtgactttaacctgaaggagcaatgacctgataacgtgcaactaaagnnnnnnnttcccaatgtgatc |
803 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47329077 |
ctgtggtggaagagcagtaaacacctggtccagtgactttaacctgaaggagcaatgacctgataacgtgcaactaaag-aaaaaattcccaatgtgatc |
47328979 |
T |
|
| Q |
804 |
caagggttattttgggttggtcctttgatttaaagggtttgggatattttttgtcattgacatttacactcttcatagt |
882 |
Q |
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||| ||||||||| ||||||||| |||| ||||||| || ||||| ||||||||||||||| |||||||||||||||| |
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| T |
47328978 |
caa-ggttatttt-ggttggtcc-ttga-ttaaagg--tttggata-tttttgtcattgaca-ttacactcttcatagt |
47328908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 9684121 - 9684155
Alignment:
| Q |
187 |
actagattcaaacattggttcgccacgttgtgaga |
221 |
Q |
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| T |
9684121 |
actagattcaaacattggttcgccacgttgtgaga |
9684155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 27429610 - 27429667
Alignment:
| Q |
190 |
agattcaaacattggttcgccacgttgtgagagtctaaccttttccattagactcaac |
247 |
Q |
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||||||||||||| ||||| ||| |||| |||| |||||| |||||||||||||||| |
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| T |
27429610 |
agattcaaacatttgttcgtcacattgtaggagtttaacctcttccattagactcaac |
27429667 |
T |
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