View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3065_high_11 (Length: 363)
Name: NF3065_high_11
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 8892755 - 8892624
Alignment:
| Q |
70 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaacaaaattaagatatatttcattgaagggtgaaatggatacaaatgaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8892755 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaactaaattaagatatatttcattgaagggtgaaatggatacaaatgaa |
8892656 |
T |
|
| Q |
170 |
aatattacaattgcattagttaatattttgaa |
201 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
8892655 |
aatattacaattgcattagataatattttgaa |
8892624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 8891739 - 8891592
Alignment:
| Q |
197 |
ttgaagtggtgcaacgtaaccaacaaaacagtactccaacggtagttgacgacacaatctacgttatggcaaagccacaaacaaagaagactattcctcc |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
8891739 |
ttgaagtggtgcaacgtaaccagcaaaacagtactccaacggcagttgacgacacaatctacgttatggcaaagccacaaacaaagaagaataatcctcc |
8891640 |
T |
|
| Q |
297 |
aaaggatcccgacgaaggaagcagtagtcgttcctcttgccattgagg |
344 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
8891639 |
agaggatcccgacgaaggaagcagtagtcgttcctcttaccgttgagg |
8891592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 8892940 - 8892864
Alignment:
| Q |
70 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaacaaaattaagatatatttcattga |
146 |
Q |
| |
|
||||||||||||||| ||| |||| ||| |||||||||||||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
8892940 |
ttagcatgttagaaatttttttaattatgaatattttctaaaagattaattaactaaagtaaaatatatttcattga |
8892864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University