View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3065_high_13 (Length: 343)

Name: NF3065_high_13
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3065_high_13
NF3065_high_13
[»] chr1 (2 HSPs)
chr1 (24-333)||(8106839-8107143)
chr1 (85-333)||(8111546-8111788)
[»] chr8 (4 HSPs)
chr8 (84-188)||(772590-772690)
chr8 (129-187)||(25113457-25113515)
chr8 (145-187)||(10894546-10894588)
chr8 (145-187)||(38050247-38050289)
[»] chr6 (1 HSPs)
chr6 (113-193)||(30890105-30890182)
[»] chr5 (1 HSPs)
chr5 (145-187)||(501099-501141)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 24 - 333
Target Start/End: Original strand, 8106839 - 8107143
Alignment:
Q  24 aagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcnnnnnnnttatacattgattaacaaatgagtgtcatgatctattttgattggt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  8106839 aagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcaaaaaaattatacattgattaacaaatgagtgtcatgatctattttgattggt 8106938  T
Q  124 tgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaac-nnnnnnnnngttgtaaaaattatata 222  Q
    |||||||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          ||||||||||||||| |    
T  8106939 tgttgtaaa----atagatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaacttttttttttgttgtaaaaattataca 8107034  T
Q  223 nnnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaact-nnnnnnnntgaagctgcttagtactgtt 321  Q
           ||||||||||   |||||||||||||||||||||||||||||||||||||||| | ||||||||         ||||||||||||||||||||    
T  8107035 tttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaatgaagctgcttagtactgtt 8107131  T
Q  322 gttttgatgatg 333  Q
    ||||||||||||    
T  8107132 gttttgatgatg 8107143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 85 - 333
Target Start/End: Original strand, 8111546 - 8111788
Alignment:
Q  85 ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||||||    
T  8111546 ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaa 8111641  T
Q  185 tgaatttgaaacnnnnnnnnngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcc 284  Q
    ||||||||||||         |||||||||||||||         ||||||||||   |||||||||||||||||||||||||||||||||||||||| |    
T  8111642 tgaatttgaaactttttttttgttgtaaaaattatacttttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattc 8111738  T
Q  285 tcttcaact-nnnnnnnntgaagctgcttagtactgttgttttgatgatg 333  Q
     ||||||||         ||||||||||||||||||||||||||||||||    
T  8111739 ccttcaactaaaaaaaaatgaagctgcttagtactgttgttttgatgatg 8111788  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 772590 - 772690
Alignment:
Q  84 attgattaacaaatgagtgtcatgatctatttt--gattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatatt 181  Q
    ||||||||||||||||||  |||||||||||||  |||||||||||| ||||||    |||||||||||||  |||||||||| |||||||||||| |||    
T  772590 attgattaacaaatgagt--catgatctattttttgattggttgttgaaaaata----gatgagtcataattcattttgattgaatgataaagaaacatt 772683  T
Q  182 aaatgaa 188  Q
    |||||||    
T  772684 aaatgaa 772690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 25113457 - 25113515
Alignment:
Q  129 taaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatga 187  Q
    |||||||||||  |||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  25113457 taaaatatataagtgagtcataatctattttaattggatgataaaaaaacattaaatga 25113515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 10894588 - 10894546
Alignment:
Q  145 gtcataatcaattttgattggatgataaagaaatattaaatga 187  Q
    ||||||||||||||||||||||||||||  ||| |||||||||    
T  10894588 gtcataatcaattttgattggatgataagaaaacattaaatga 10894546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 38050247 - 38050289
Alignment:
Q  145 gtcataatcaattttgattggatgataaagaaatattaaatga 187  Q
    ||||||||| ||||||||||||||||||  |||||||||||||    
T  38050247 gtcataatccattttgattggatgataagaaaatattaaatga 38050289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 30890105 - 30890182
Alignment:
Q  113 ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgat-aaagaaatattaaatgaatttga 193  Q
    |||| ||||||||||| |||||||||    ||||||| ||| |||||||||||||||| ||| ||| |||||||||||||||    
T  30890105 tttttattggttgttgaaaaatatat----gagtcatgatctattttgattggatgataaaaaaaacattaaatgaatttga 30890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 501141 - 501099
Alignment:
Q  145 gtcataatcaattttgattggatgataaagaaatattaaatga 187  Q
    ||||||||||||||||||||||||||||  || ||||||||||    
T  501141 gtcataatcaattttgattggatgataagaaagtattaaatga 501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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