View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3065_high_14 (Length: 339)
Name: NF3065_high_14
Description: NF3065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3065_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 38996546 - 38996857
Alignment:
| Q |
11 |
caaaggcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattggac |
110 |
Q |
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| T |
38996546 |
caaaagcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattggac |
38996645 |
T |
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| Q |
111 |
ggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacaggtatgaaccgatgacttggattgaatcgggtaaatactatacctctttt |
210 |
Q |
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| T |
38996646 |
ggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacgggtatgaaccgatgacttggattgaatcgggtaaatactatacctctttt |
38996745 |
T |
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| Q |
211 |
tcgatttctttgtacattttttctgaaattcttnnnnnnnnncgacatcattttcctataagagataaggagtttaaggtgccggattaaaatccgaatg |
310 |
Q |
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| T |
38996746 |
tcgatttctttgtacattttttctgaaattctt--aaaaaaacgacatcattttcctataagagataaggagtttaaggtgccggattaaaatccgaacg |
38996843 |
T |
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| Q |
311 |
aatgagtaaatatt |
324 |
Q |
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|||||||||||||| |
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| T |
38996844 |
aatgagtaaatatt |
38996857 |
T |
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